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1 import os, sys
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2 from distutils.core import setup
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3 from setuptools import find_packages
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4
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5 def readme():
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6 with open('README.md') as f:
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7 return f.read()
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8
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9 setup(name='SeqSero2',
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10 version=open("version.py").readlines()[-1].split()[-1].strip("\"'"),
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11 description='Salmonella serotyping',
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12 long_description=readme(),
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13 classifiers=[
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14 'Development Status :: 3 - Alpha',
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15 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
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16 'Programming Language :: Python :: 3',
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17 'Topic :: Text Processing :: Linguistic',
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18 ],
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19 keywords='Salmonella serotyping bioinformatics WGS',
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20 url='https://github.com/denglab/SeqSero2/',
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21 author='Shaokang Zhang, Hendrik C Den-Bakker and Xiangyu Deng',
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22 author_email='zskzsk@uga.edu, Hendrik.DenBakker@uga.edu, xdeng@uga.edu',
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23 license='GPLv2',
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24 scripts=["bin/deinterleave_fastq.sh","bin/Initial_Conditions.py","bin/SeqSero2_package.py","bin/SeqSero2_update_kmer_database.py"],
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25 packages=[""],
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26 include_package_data = True,
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27 install_requires=['biopython==1.73'],
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28 data_files=[("seqsero2_db",["seqsero2_db/antigens.pickle","seqsero2_db/H_and_O_and_specific_genes.fasta","seqsero2_db/invA_mers_dict","seqsero2_db/special.pickle"])],
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29 zip_safe=False,
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30 )
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