Mercurial > repos > jpayne > seqsero_v2

comparison test-data/Seqsero_result_25k.tsv @ 17:03f7b358d57f

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planemo upload
author jpayne
date Tue, 25 Mar 2025 23:22:38 -0400
parents 87c7eebc6797
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16:3b6d5b60968f 17:03f7b358d57f
1 sample_name O_antigen_prediction H1_antigen_prediction H2_antigen_prediction predicted_antigenic_profile predicted_subspecies predicted_serotype note * 1 Sample name Output directory Input files O antigen prediction H1 antigen prediction(fliC) H2 antigen prediction(fljB) Predicted identification Predicted antigenic profile Predicted serotype Note
2 forward_25k_1.fastq - g,s,t - -:g,s,t:- I N/A (The predicted antigenic profile does not exist in the White-Kauffmann-Le Minor scheme) 2 forward_25k_1.fastq /tmp/tmp1eiudkwg/job_working_directory/000/3/working/output forward_25k_1.fastq - g,s,t - - -:g,s,t:- - -:g,s,t:- The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.