Mercurial > repos > jpayne > seqsero_v2

diff test-data/Seqsero_result_25k.tsv @ 17:03f7b358d57f

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author jpayne
date Tue, 25 Mar 2025 23:22:38 -0400
parents 87c7eebc6797
children
line wrap: on
line diff
--- a/test-data/Seqsero_result_25k.tsv	Wed Mar 01 13:21:51 2023 -0500
+++ b/test-data/Seqsero_result_25k.tsv	Tue Mar 25 23:22:38 2025 -0400
@@ -1,2 +1,2 @@
-sample_name	O_antigen_prediction	H1_antigen_prediction	H2_antigen_prediction	predicted_antigenic_profile	predicted_subspecies	predicted_serotype	note	*
-forward_25k_1.fastq	-	g,s,t	-	-:g,s,t:-	I	N/A (The predicted antigenic profile does not exist in the White-Kauffmann-Le Minor scheme)		
+Sample name	Output directory	Input files	O antigen prediction	H1 antigen prediction(fliC)	H2 antigen prediction(fljB)	Predicted identification	Predicted antigenic profile	Predicted serotype	Note
+forward_25k_1.fastq	/tmp/tmp1eiudkwg/job_working_directory/000/3/working/output	forward_25k_1.fastq	-	g,s,t	-	-	-:g,s,t:-	- -:g,s,t:-	The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.