Mercurial > repos > jpayne > snp_pipeline

comparison 1_map_reads.xml @ 40:02733e77f84f

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 14 Feb 2018 13:10:23 -0500
parents 1fe3b14f7f1b
children 62531f7399dc
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39:1fe3b14f7f1b 40:02733e77f84f
5 <requirement type="package" version="2.3.4">bowtie2</requirement> 5 <requirement type="package" version="2.3.4">bowtie2</requirement>
6 <requirement type="package" version="1.5.11">boto3</requirement> 6 <requirement type="package" version="1.5.11">boto3</requirement>
7 <!-- <requirement type="package" version="3.5">python</requirement> --> 7 <!-- <requirement type="package" version="3.5">python</requirement> -->
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
10 env && 11 env &&
11 #if $reads.reads_select == 'collection' 12 #if $reads.reads_select == 'collection'
12 export files="$reads.coll.forward $reads.coll.reverse" && 13 export files="$reads.coll.forward $reads.coll.reverse" &&
13 export params="-1 $reads.coll.forward -2 $reads.coll.reverse" && 14 export params="-1 $reads.coll.forward -2 $reads.coll.reverse" &&
14 #else 15 #else