Mercurial > repos > jpayne > snp_pipeline

diff 1_map_reads.xml @ 40:02733e77f84f

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Wed, 14 Feb 2018 13:10:23 -0500
parents 1fe3b14f7f1b
children 62531f7399dc
line wrap: on
line diff
--- a/1_map_reads.xml	Wed Feb 14 13:06:44 2018 -0500
+++ b/1_map_reads.xml	Wed Feb 14 13:10:23 2018 -0500
@@ -7,6 +7,7 @@
         <!-- <requirement type="package" version="3.5">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
         env &&
         #if $reads.reads_select == 'collection'
             export files="$reads.coll.forward $reads.coll.reverse"          &&