Mercurial > repos > jpayne > snp_pipeline

comparison 6_merge_vcfs.xml @ 53:40405b16de1d

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"planemo upload"
author jpayne
date Thu, 05 Nov 2020 15:30:24 -0500
parents 0acc1975bbeb
children 2939020396a4
comparison
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52:0acc1975bbeb 53:40405b16de1d
14 #for $vcf in $vcfs 14 #for $vcf in $vcfs
15 -n $vcf.element_identifier -f $vcf 15 -n $vcf.element_identifier -f $vcf
16 #end for 16 #end for
17 > ./file 17 > ./file
18 && cat ./file 18 && cat ./file
19 && cfsan_snp_pipeline merge_vcfs ./file
19 && cat ./logs*/*log 1>&2 20 && cat ./logs*/*log 1>&2
20 && cfsan_snp_pipeline merge_vcfs ./file
21 ]]></command> 21 ]]></command>
22 <inputs> 22 <inputs>
23 <param type="data_collection" format="vcf" collection_type="list" name="vcfs" label="List of VCFs" /> 23 <param type="data_collection" format="vcf" collection_type="list" name="vcfs" label="List of VCFs" />
24 </inputs> 24 </inputs>
25 <outputs> 25 <outputs>