Mercurial > repos > jpayne > snp_pipeline

comparison 4_merge_sites.xml @ 62:d497922d6caa

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planemo upload
author jpayne
date Fri, 28 Jun 2024 00:26:24 -0400
parents 2af5e948dd5c
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61:2af5e948dd5c 62:d497922d6caa
1 <tool id="merge_sites" name="4. Merge Sites" version="1.0.1" profile="16.10"> 1 <tool id="merge_sites" name="4. Merge Sites" version="1.0.1" profile="16.10">
2 <description>from multiple samples</description> 2 <description>from multiple samples</description>
3 <requirements> 3 <requirements>
4 <!-- <container type="docker">quay.io/biocontainers/mulled-v2-a9689be5d4f7dc232fcd76f2f32bef2b80afcb49:0560aee94873e022862623c7766c9634a09b9513-0</container> --> 4 <container type="docker">quay.io/staphb/cfsan-snp-pipeline</container>
5 <requirement type="package" version="2.4.5">bowtie2</requirement> 5 <!-- <requirement type="package" version="2.4.5">bowtie2</requirement>
6 <requirement type="package" version="1.9">samtools</requirement> 6 <requirement type="package" version="1.9">samtools</requirement>
7 <requirement type="package" version="1.0.8">bzip2</requirement> 7 <requirement type="package" version="1.0.8">bzip2</requirement>
8 <requirement type="package" version="2.2.1">snp-pipeline</requirement> 8 <requirement type="package" version="2.2.1">snp-pipeline</requirement> -->
9 <!-- <requirement type="package" version="3.6.8">python</requirement> --> 9 <!-- <requirement type="package" version="3.6.8">python</requirement> -->
10 </requirements> 10 </requirements>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
12 export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" && 12 export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
13 python $__tool_directory__/snp-wind.py ./ 13 python $__tool_directory__/snp-wind.py ./