Mercurial > repos > jpayne > snp_pipeline

diff 4_merge_sites.xml @ 62:d497922d6caa

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author jpayne
date Fri, 28 Jun 2024 00:26:24 -0400
parents 2af5e948dd5c
children
line wrap: on
line diff
--- a/4_merge_sites.xml	Wed Jun 26 00:58:54 2024 -0400
+++ b/4_merge_sites.xml	Fri Jun 28 00:26:24 2024 -0400
@@ -1,11 +1,11 @@
 <tool id="merge_sites" name="4. Merge Sites" version="1.0.1" profile="16.10">
     <description>from multiple samples</description>
     <requirements>
-        <!-- <container type="docker">quay.io/biocontainers/mulled-v2-a9689be5d4f7dc232fcd76f2f32bef2b80afcb49:0560aee94873e022862623c7766c9634a09b9513-0</container> -->
-        <requirement type="package" version="2.4.5">bowtie2</requirement>
+        <container type="docker">quay.io/staphb/cfsan-snp-pipeline</container>
+        <!-- <requirement type="package" version="2.4.5">bowtie2</requirement>
         <requirement type="package" version="1.9">samtools</requirement>
         <requirement type="package" version="1.0.8">bzip2</requirement>
-        <requirement type="package" version="2.2.1">snp-pipeline</requirement>
+        <requirement type="package" version="2.2.1">snp-pipeline</requirement> -->
         <!-- <requirement type="package" version="3.6.8">python</requirement> -->
     </requirements>
     <command detect_errors="exit_code"><![CDATA[