Mercurial > repos > jpayne > snp_pipeline
diff test-data/snpma.vcf @ 58:d53281e6edae
planemo upload
| author | jpayne |
|---|---|
| date | Mon, 17 Jun 2024 02:57:10 -0400 |
| parents | eefdd97a6749 |
| children |
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--- a/test-data/snpma.vcf Fri Nov 06 12:50:48 2020 -0500 +++ b/test-data/snpma.vcf Mon Jun 17 02:57:10 2024 -0400 @@ -19,8 +19,8 @@ ##FILTER=<ID=StrBias0,Description="Fraction of variant supporting reads below 0.00 on one strand"> ##FILTER=<ID=Region,Description="Position is in dense region of snps or near the end of the contig."> ##contig=<ID=gi|9626243|ref|NC_001416.1|> -##bcftools_mergeVersion=1.3.1+htslib-1.3.1 -##bcftools_mergeCommand=merge -o ./snpma.vcf --merge all --info-rules NS:sum ./tmp.vcf.PYaZFQ/sample1.vcf.gz ./tmp.vcf.PYaZFQ/sample2.vcf.gz ./tmp.vcf.PYaZFQ/sample3.vcf.gz ./tmp.vcf.PYaZFQ/sample4.vcf.gz +##bcftools_mergeVersion=1.9+htslib-1.9 +##bcftools_mergeCommand=merge -o snpma.vcf --merge all --info-rules NS:sum tmp.vcf.3imm9gjk/sample1.vcf.gz tmp.vcf.3imm9gjk/sample2.vcf.gz tmp.vcf.3imm9gjk/sample3.vcf.gz tmp.vcf.3imm9gjk/sample4.vcf.gz; Date=Mon Aug 1 12:20:35 2022 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample1 sample2 sample3 sample4 gi|9626243|ref|NC_001416.1| 403 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:27:0:27:0:0:13:14:PASS 0:24:24:0:11:13:0:0:PASS 0:26:26:0:13:13:0:0:PASS 0:15:15:0:11:4:0:0:PASS gi|9626243|ref|NC_001416.1| 550 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:21:1:13:8:0:1:PASS 0:26:26:0:14:12:0:0:PASS 0:29:29:0:13:16:0:0:PASS 1:26:0:26:0:0:14:12:PASS