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annotate test-data/snpma.vcf @ 58:d53281e6edae

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planemo upload
author jpayne
date Mon, 17 Jun 2024 02:57:10 -0400
parents eefdd97a6749
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jpayne@0 1 ##fileformat=VCFv4.1
jpayne@0 2 ##FILTER=<ID=PASS,Description="All filters passed">
jpayne@0 3 ##fileDate=20180103
jpayne@0 4 ##source=CFSAN SNP-Pipeline 1.0.1
jpayne@0 5 ##reference=lambda_virus.fasta
jpayne@0 6 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
jpayne@0 7 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
jpayne@0 8 ##FORMAT=<ID=SDP,Number=1,Type=Integer,Description="Raw read depth">
jpayne@0 9 ##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Depth of reference-supporting bases (reads1)">
jpayne@0 10 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Depth of variant-supporting bases (reads2)">
jpayne@0 11 ##FORMAT=<ID=RDF,Number=1,Type=Integer,Description="Depth of reference-supporting bases on forward strand (reads1plus)">
jpayne@0 12 ##FORMAT=<ID=RDR,Number=1,Type=Integer,Description="Depth of reference-supporting bases on reverse strand (reads1minus)">
jpayne@0 13 ##FORMAT=<ID=ADF,Number=1,Type=Integer,Description="Depth of variant-supporting bases on forward strand (reads2plus)">
jpayne@0 14 ##FORMAT=<ID=ADR,Number=1,Type=Integer,Description="Depth of variant-supporting bases on reverse strand (reads2minus)">
jpayne@0 15 ##FORMAT=<ID=FT,Number=1,Type=String,Description="Genotype filters using the same codes as the FILTER data element">
jpayne@0 16 ##FILTER=<ID=RawDpth,Description="No read depth">
jpayne@0 17 ##FILTER=<ID=VarFreq60,Description="Variant base frequency below 0.60">
jpayne@0 18 ##FILTER=<ID=StrDpth0,Description="Less than 0 variant-supporing reads on at least one strand">
jpayne@0 19 ##FILTER=<ID=StrBias0,Description="Fraction of variant supporting reads below 0.00 on one strand">
jpayne@0 20 ##FILTER=<ID=Region,Description="Position is in dense region of snps or near the end of the contig.">
jpayne@0 21 ##contig=<ID=gi|9626243|ref|NC_001416.1|>
jpayne@58 22 ##bcftools_mergeVersion=1.9+htslib-1.9
jpayne@58 23 ##bcftools_mergeCommand=merge -o snpma.vcf --merge all --info-rules NS:sum tmp.vcf.3imm9gjk/sample1.vcf.gz tmp.vcf.3imm9gjk/sample2.vcf.gz tmp.vcf.3imm9gjk/sample3.vcf.gz tmp.vcf.3imm9gjk/sample4.vcf.gz; Date=Mon Aug 1 12:20:35 2022
jpayne@0 24 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample1 sample2 sample3 sample4
jpayne@0 25 gi|9626243|ref|NC_001416.1| 403 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:27:0:27:0:0:13:14:PASS 0:24:24:0:11:13:0:0:PASS 0:26:26:0:13:13:0:0:PASS 0:15:15:0:11:4:0:0:PASS
jpayne@0 26 gi|9626243|ref|NC_001416.1| 550 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:21:1:13:8:0:1:PASS 0:26:26:0:14:12:0:0:PASS 0:29:29:0:13:16:0:0:PASS 1:26:0:26:0:0:14:12:PASS
jpayne@0 27 gi|9626243|ref|NC_001416.1| 586 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:12:6:0:0:PASS 0:23:23:0:12:11:0:0:PASS 0:37:37:0:15:22:0:0:PASS 1:27:0:25:0:0:17:8:PASS
jpayne@0 28 gi|9626243|ref|NC_001416.1| 753 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:25:0:24:0:0:16:8:PASS 0:27:27:0:10:17:0:0:PASS 0:26:24:2:13:11:0:2:PASS 0:23:23:0:12:11:0:0:PASS
jpayne@0 29 gi|9626243|ref|NC_001416.1| 1019 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:10:15:0:0:PASS 0:18:18:0:7:11:0:0:PASS 0:25:25:0:10:15:0:0:PASS 1:22:0:22:0:0:8:14:PASS
jpayne@0 30 gi|9626243|ref|NC_001416.1| 1079 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:26:0:25:0:0:9:16:PASS 0:20:20:0:10:10:0:0:PASS 0:31:30:1:16:14:1:0:PASS 0:27:27:0:11:16:0:0:PASS
jpayne@0 31 gi|9626243|ref|NC_001416.1| 1540 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:24:0:24:0:0:13:11:PASS 0:22:22:0:3:19:0:0:PASS 0:21:21:0:10:11:0:0:PASS 0:28:28:0:14:14:0:0:PASS
jpayne@0 32 gi|9626243|ref|NC_001416.1| 1620 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:31:0:14:17:0:0:PASS 0:11:10:1:0:10:0:1:PASS 0:23:23:0:10:13:0:0:PASS 1:19:0:19:0:0:7:12:PASS
jpayne@0 33 gi|9626243|ref|NC_001416.1| 1650 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:31:0:14:17:0:0:PASS 0:9:9:0:0:9:0:0:PASS 0:21:21:0:11:10:0:0:PASS 1:26:0:26:0:0:10:16:PASS
jpayne@0 34 gi|9626243|ref|NC_001416.1| 1788 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:10:14:0:0:PASS 0:8:8:0:8:0:0:0:PASS 0:13:13:0:3:10:0:0:PASS 1:16:0:16:0:0:9:7:PASS
jpayne@0 35 gi|9626243|ref|NC_001416.1| 1804 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:23:0:23:0:0:11:12:PASS 0:11:11:0:10:1:0:0:PASS 0:14:14:0:7:7:0:0:PASS 0:18:18:0:7:11:0:0:PASS
jpayne@0 36 gi|9626243|ref|NC_001416.1| 2123 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:24:0:24:0:0:11:13:PASS 0:20:20:0:10:10:0:0:PASS 0:23:23:0:10:13:0:0:PASS 0:28:28:0:13:15:0:0:PASS
jpayne@0 37 gi|9626243|ref|NC_001416.1| 2439 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:13:10:0:0:PASS 0:16:16:0:10:6:0:0:PASS 1:16:0:16:0:0:8:8:PASS 0:27:27:0:10:17:0:0:PASS
jpayne@0 38 gi|9626243|ref|NC_001416.1| 2452 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:18:1:9:9:0:1:PASS 0:22:21:1:11:10:1:0:PASS 0:21:20:1:10:10:0:1:PASS 1:23:1:22:1:0:13:9:PASS
jpayne@0 39 gi|9626243|ref|NC_001416.1| 2599 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:16:12:0:0:PASS 1:25:0:25:0:0:8:17:PASS 0:24:24:0:12:12:0:0:PASS 0:19:19:0:8:11:0:0:PASS
jpayne@0 40 gi|9626243|ref|NC_001416.1| 3063 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:16:10:0:0:PASS 0:26:25:1:16:9:0:1:PASS 0:25:24:1:11:13:0:1:PASS 1:22:0:21:0:0:10:11:PASS
jpayne@0 41 gi|9626243|ref|NC_001416.1| 3351 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:24:0:24:0:0:10:14:PASS 0:31:30:1:12:18:0:1:PASS 0:29:29:0:15:14:0:0:PASS 0:24:24:0:10:14:0:0:PASS
jpayne@0 42 gi|9626243|ref|NC_001416.1| 3648 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:13:11:0:0:PASS 0:23:23:0:10:13:0:0:PASS 1:28:0:27:0:0:15:12:PASS 0:22:22:0:10:12:0:0:PASS
jpayne@0 43 gi|9626243|ref|NC_001416.1| 3656 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:25:0:25:0:0:13:12:PASS 0:20:20:0:8:12:0:0:PASS 0:24:24:0:12:12:0:0:PASS 0:28:28:0:18:10:0:0:PASS
jpayne@0 44 gi|9626243|ref|NC_001416.1| 3678 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:17:17:0:7:10:0:0:PASS 1:19:1:18:1:0:10:8:PASS 0:24:24:0:15:9:0:0:PASS 0:22:22:0:11:11:0:0:PASS
jpayne@0 45 gi|9626243|ref|NC_001416.1| 4977 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:25:0:25:0:0:12:13:PASS 0:30:29:1:12:17:1:0:PASS 0:27:27:0:11:16:0:0:PASS 0:27:26:1:14:12:0:1:PASS
jpayne@0 46 gi|9626243|ref|NC_001416.1| 5142 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:21:3:11:10:3:0:PASS 1:18:0:18:0:0:4:14:PASS 0:21:21:0:12:9:0:0:PASS 0:25:25:0:9:16:0:0:PASS
jpayne@0 47 gi|9626243|ref|NC_001416.1| 5336 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:12:11:0:0:PASS 1:8:0:8:0:0:1:7:PASS 0:18:17:1:11:6:1:0:PASS 0:33:33:0:11:22:0:0:PASS
jpayne@0 48 gi|9626243|ref|NC_001416.1| 5462 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:14:11:0:0:PASS 0:9:9:0:9:0:0:0:PASS 1:24:0:22:0:0:17:5:PASS 0:32:32:0:10:22:0:0:PASS
jpayne@0 49 gi|9626243|ref|NC_001416.1| 5482 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:18:0:18:0:0:9:9:PASS 0:12:10:2:10:0:2:0:PASS 0:22:22:0:14:8:0:0:PASS 0:26:25:1:13:12:0:1:PASS
jpayne@0 50 gi|9626243|ref|NC_001416.1| 5516 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:16:0:16:0:0:9:7:PASS 0:11:10:1:10:0:1:0:PASS 0:19:19:0:11:8:0:0:PASS 0:25:23:2:13:10:0:2:PASS
jpayne@0 51 gi|9626243|ref|NC_001416.1| 5800 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:5:14:PASS 0:23:23:0:16:7:0:0:PASS 0:23:23:0:10:13:0:0:PASS 0:18:18:0:10:8:0:0:PASS
jpayne@0 52 gi|9626243|ref|NC_001416.1| 5818 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:10:15:0:0:PASS 0:26:26:0:15:11:0:0:PASS 0:22:21:1:10:11:1:0:PASS 1:23:0:22:0:0:11:11:PASS
jpayne@0 53 gi|9626243|ref|NC_001416.1| 5994 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:15:15:0:6:9:0:0:PASS 1:21:0:21:0:0:10:11:PASS 0:22:22:0:9:13:0:0:PASS 0:25:25:0:15:10:0:0:PASS
jpayne@0 54 gi|9626243|ref|NC_001416.1| 6296 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:11:8:0:0:PASS 0:24:24:0:10:14:0:0:PASS 0:25:25:0:11:14:0:0:PASS 1:26:0:25:0:0:13:12:PASS
jpayne@0 55 gi|9626243|ref|NC_001416.1| 6535 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:15:11:0:0:PASS 1:22:0:21:0:0:8:13:PASS 0:19:19:0:7:12:0:0:PASS 0:27:27:0:13:14:0:0:PASS
jpayne@0 56 gi|9626243|ref|NC_001416.1| 6824 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:11:8:PASS 0:24:23:1:8:15:1:0:PASS 0:14:13:1:5:8:0:1:PASS 0:23:23:0:12:11:0:0:PASS
jpayne@0 57 gi|9626243|ref|NC_001416.1| 7424 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:20:19:1:8:11:0:1:PASS 1:25:0:24:0:0:15:9:PASS 0:29:28:1:11:17:0:1:PASS 0:6:6:0:0:6:0:0:PASS
jpayne@0 58 gi|9626243|ref|NC_001416.1| 7668 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:26:1:17:9:0:1:PASS 0:26:26:0:14:12:0:0:PASS 1:17:0:17:0:0:6:11:PASS 0:14:14:0:10:4:0:0:PASS
jpayne@0 59 gi|9626243|ref|NC_001416.1| 7897 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:26:0:26:0:0:13:13:PASS 0:26:26:0:9:17:0:0:PASS 0:23:23:0:13:10:0:0:PASS 0:21:21:0:11:10:0:0:PASS
jpayne@0 60 gi|9626243|ref|NC_001416.1| 8420 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:31:0:19:12:0:0:PASS 0:26:26:0:11:15:0:0:PASS 1:32:0:32:0:0:22:10:PASS 0:24:24:0:12:12:0:0:PASS
jpayne@0 61 gi|9626243|ref|NC_001416.1| 8938 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:13:9:0:0:PASS 0:25:25:0:12:13:0:0:PASS 0:29:29:0:19:10:0:0:PASS 1:29:0:29:0:0:17:12:PASS
jpayne@0 62 gi|9626243|ref|NC_001416.1| 9175 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:22:0:0:8:14:PASS 0:13:12:1:3:9:0:1:PASS 0:25:25:0:15:10:0:0:PASS 0:31:31:0:13:18:0:0:PASS
jpayne@0 63 gi|9626243|ref|NC_001416.1| 9234 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:22:1:12:10:0:1:PASS 0:21:21:0:10:11:0:0:PASS 0:27:27:0:11:16:0:0:PASS 1:21:0:21:0:0:10:11:PASS
jpayne@0 64 gi|9626243|ref|NC_001416.1| 9919 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:32:32:0:16:16:0:0:PASS 0:19:19:0:8:11:0:0:PASS 1:24:0:24:0:0:14:10:PASS 0:24:24:0:11:13:0:0:PASS
jpayne@0 65 gi|9626243|ref|NC_001416.1| 10127 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:25:1:13:12:0:1:PASS 1:32:0:32:0:0:17:15:PASS 0:25:25:0:14:11:0:0:PASS 0:24:24:0:12:12:0:0:PASS
jpayne@0 66 gi|9626243|ref|NC_001416.1| 10264 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:30:30:0:20:10:0:0:PASS 0:21:21:0:10:11:0:0:PASS 1:24:0:24:0:0:10:14:PASS 0:18:18:0:14:4:0:0:PASS
jpayne@0 67 gi|9626243|ref|NC_001416.1| 10421 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:16:0:7:9:0:0:PASS 0:30:30:0:22:8:0:0:PASS 0:16:14:2:6:8:2:0:PASS 1:18:0:18:0:0:8:10:PASS
jpayne@0 68 gi|9626243|ref|NC_001416.1| 10568 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:22:1:14:8:0:1:PASS 0:24:24:0:11:13:0:0:PASS 0:16:16:0:9:7:0:0:PASS 1:21:0:21:0:0:10:11:PASS
jpayne@0 69 gi|9626243|ref|NC_001416.1| 11066 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:23:1:12:11:0:1:PASS 0:26:26:0:11:15:0:0:PASS 1:20:0:20:0:0:6:14:PASS 0:27:26:1:9:17:0:1:PASS
jpayne@0 70 gi|9626243|ref|NC_001416.1| 11128 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:13:13:0:7:6:0:0:PASS 0:28:28:0:11:17:0:0:PASS 0:13:13:0:3:10:0:0:PASS 1:25:0:25:0:0:10:15:PASS
jpayne@0 71 gi|9626243|ref|NC_001416.1| 11782 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:15:7:0:0:PASS 1:17:0:17:0:0:7:10:PASS 0:14:14:0:4:10:0:0:PASS 0:23:23:0:11:12:0:0:PASS
jpayne@0 72 gi|9626243|ref|NC_001416.1| 12070 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:16:2:7:9:2:0:PASS 0:20:20:0:9:11:0:0:PASS 1:11:0:11:0:0:8:3:PASS 0:18:18:0:12:6:0:0:PASS
jpayne@0 73 gi|9626243|ref|NC_001416.1| 12717 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:29:0:28:0:0:13:15:PASS 0:22:22:0:7:15:0:0:PASS 0:18:18:0:13:5:0:0:PASS 0:20:19:1:7:12:1:0:PASS
jpayne@0 74 gi|9626243|ref|NC_001416.1| 12795 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:27:0:27:0:0:17:10:PASS 0:23:23:0:11:12:0:0:PASS 0:16:15:1:7:8:1:0:PASS 0:24:24:0:15:9:0:0:PASS
jpayne@0 75 gi|9626243|ref|NC_001416.1| 12876 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:29:0:17:12:0:0:PASS 0:25:25:0:14:11:0:0:PASS 0:21:20:1:12:8:1:0:PASS 1:19:0:19:0:0:7:12:PASS
jpayne@0 76 gi|9626243|ref|NC_001416.1| 12959 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:22:0:0:14:8:PASS 0:19:19:0:8:11:0:0:PASS 0:27:27:0:13:14:0:0:PASS 0:23:21:2:10:11:2:0:PASS
jpayne@0 77 gi|9626243|ref|NC_001416.1| 12970 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:9:10:0:0:PASS 0:20:20:0:9:11:0:0:PASS 1:26:0:26:0:0:14:12:PASS 0:23:23:0:13:10:0:0:PASS
jpayne@0 78 gi|9626243|ref|NC_001416.1| 13107 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:17:1:7:10:0:1:PASS 0:21:20:1:7:13:1:0:PASS 1:16:0:16:0:0:11:5:PASS 0:22:21:1:8:13:0:1:PASS
jpayne@0 79 gi|9626243|ref|NC_001416.1| 13264 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:15:1:7:8:1:0:PASS 1:23:0:23:0:0:15:8:PASS 0:21:21:0:10:11:0:0:PASS 0:23:23:0:12:11:0:0:PASS
jpayne@0 80 gi|9626243|ref|NC_001416.1| 13542 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:13:12:0:0:PASS 1:26:0:25:0:0:16:9:PASS 0:19:19:0:12:7:0:0:PASS 0:23:23:0:13:10:0:0:PASS
jpayne@0 81 gi|9626243|ref|NC_001416.1| 13647 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:20:1:8:12:0:1:PASS 0:27:27:0:15:12:0:0:PASS 0:25:25:0:20:5:0:0:PASS 1:17:0:17:0:0:11:6:PASS
jpayne@0 82 gi|9626243|ref|NC_001416.1| 13952 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:9:17:0:0:PASS 1:33:0:33:0:0:14:19:PASS 0:20:19:1:8:11:1:0:PASS 0:33:33:0:12:21:0:0:PASS
jpayne@0 83 gi|9626243|ref|NC_001416.1| 13971 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:17:1:8:9:0:1:PASS 0:28:28:0:13:15:0:0:PASS 1:27:0:27:0:0:12:15:PASS 0:30:29:1:11:18:0:1:PASS
jpayne@0 84 gi|9626243|ref|NC_001416.1| 15384 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:24:1:17:7:1:0:PASS 0:30:30:0:14:16:0:0:PASS 1:24:0:24:0:0:15:9:PASS 0:24:24:0:14:10:0:0:PASS
jpayne@0 85 gi|9626243|ref|NC_001416.1| 15715 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:8:11:0:0:PASS 1:24:0:24:0:0:17:7:PASS 0:24:24:0:13:11:0:0:PASS 0:23:23:0:8:15:0:0:PASS
jpayne@0 86 gi|9626243|ref|NC_001416.1| 15967 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:10:10:0:10:0:0:0:PASS 1:28:0:26:0:0:14:12:PASS 0:25:25:0:11:14:0:0:PASS 0:29:28:1:14:14:1:0:PASS
jpayne@0 87 gi|9626243|ref|NC_001416.1| 16070 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:12:12:0:9:3:0:0:PASS 0:27:27:0:19:8:0:0:PASS 1:22:0:21:0:0:14:7:PASS 0:25:24:1:11:13:0:1:PASS
jpayne@0 88 gi|9626243|ref|NC_001416.1| 16654 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:24:0:24:0:0:15:9:PASS 0:20:20:0:8:12:0:0:PASS 0:10:10:0:4:6:0:0:PASS 0:25:25:0:10:15:0:0:PASS
jpayne@0 89 gi|9626243|ref|NC_001416.1| 16715 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:9:10:PASS 0:27:27:0:14:13:0:0:PASS 0:17:17:0:11:6:0:0:PASS 0:20:20:0:6:14:0:0:PASS
jpayne@0 90 gi|9626243|ref|NC_001416.1| 17142 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:17:17:0:10:7:0:0:PASS 1:27:0:27:0:0:14:13:PASS 0:24:24:0:9:15:0:0:PASS 0:15:15:0:6:9:0:0:PASS
jpayne@0 91 gi|9626243|ref|NC_001416.1| 17311 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:15:9:0:0:PASS 1:35:0:35:0:0:15:20:PASS 0:20:20:0:11:9:0:0:PASS 0:10:10:0:1:9:0:0:PASS
jpayne@0 92 gi|9626243|ref|NC_001416.1| 17854 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:10:11:0:0:PASS 1:20:0:20:0:0:6:14:PASS 0:20:20:0:10:10:0:0:PASS 0:36:34:2:18:16:0:2:PASS
jpayne@0 93 gi|9626243|ref|NC_001416.1| 18151 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:9:9:0:0:PASS 0:27:27:0:16:11:0:0:PASS 1:22:0:22:0:0:11:11:PASS 0:25:25:0:14:11:0:0:PASS
jpayne@0 94 gi|9626243|ref|NC_001416.1| 18188 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:11:13:0:0:PASS 0:31:31:0:14:17:0:0:PASS 0:20:19:1:9:10:0:1:PASS 1:31:0:31:0:0:17:14:PASS
jpayne@0 95 gi|9626243|ref|NC_001416.1| 18210 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:12:7:0:0:PASS 0:30:28:2:13:15:0:2:PASS 0:22:22:0:11:11:0:0:PASS 1:29:0:29:0:0:15:14:PASS
jpayne@0 96 gi|9626243|ref|NC_001416.1| 18420 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:11:13:0:0:PASS 1:18:0:18:0:0:10:8:PASS 0:31:31:0:18:13:0:0:PASS 0:17:17:0:6:11:0:0:PASS
jpayne@0 97 gi|9626243|ref|NC_001416.1| 18598 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:25:0:25:0:0:14:11:PASS 0:28:27:1:14:13:0:1:PASS 0:17:17:0:11:6:0:0:PASS 0:20:20:0:12:8:0:0:PASS
jpayne@0 98 gi|9626243|ref|NC_001416.1| 18652 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:12:12:0:0:PASS 1:25:0:25:0:0:15:10:PASS 0:17:17:0:8:9:0:0:PASS 0:21:21:0:12:9:0:0:PASS
jpayne@0 99 gi|9626243|ref|NC_001416.1| 18989 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:32:32:0:12:20:0:0:PASS 0:26:26:0:15:11:0:0:PASS 1:30:0:30:0:0:13:17:PASS 0:21:21:0:7:14:0:0:PASS
jpayne@0 100 gi|9626243|ref|NC_001416.1| 19208 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:10:12:0:0:PASS 1:17:0:17:0:0:9:8:PASS 0:31:31:0:16:15:0:0:PASS 0:31:30:1:15:15:0:1:PASS
jpayne@0 101 gi|9626243|ref|NC_001416.1| 19448 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:17:17:0:7:10:0:0:PASS 0:32:32:0:14:18:0:0:PASS 1:20:1:19:1:0:7:12:PASS 0:33:33:0:21:12:0:0:PASS
jpayne@0 102 gi|9626243|ref|NC_001416.1| 19469 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:21:0:21:0:0:11:10:PASS 0:30:30:0:12:18:0:0:PASS 0:26:24:2:11:13:1:1:PASS 0:31:31:0:17:14:0:0:PASS
jpayne@0 103 gi|9626243|ref|NC_001416.1| 20079 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:14:12:0:0:PASS 0:23:23:0:14:9:0:0:PASS 1:36:0:36:0:0:19:17:PASS 0:32:32:0:17:15:0:0:PASS
jpayne@0 104 gi|9626243|ref|NC_001416.1| 20099 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:28:0:28:0:0:14:14:PASS 0:28:28:0:16:12:0:0:PASS 0:26:26:0:13:13:0:0:PASS 0:22:22:0:10:12:0:0:PASS
jpayne@0 105 gi|9626243|ref|NC_001416.1| 20289 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:32:31:1:15:16:1:0:PASS 0:34:34:0:19:15:0:0:PASS 1:23:0:23:0:0:7:16:PASS 0:29:28:1:13:15:1:0:PASS
jpayne@0 106 gi|9626243|ref|NC_001416.1| 20367 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:29:0:9:20:0:0:PASS 1:32:0:32:0:0:20:12:PASS 0:26:26:0:12:14:0:0:PASS 0:26:26:0:10:16:0:0:PASS
jpayne@0 107 gi|9626243|ref|NC_001416.1| 21110 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:18:0:18:0:0:6:12:PASS 0:31:31:0:20:11:0:0:PASS 0:12:12:0:1:11:0:0:PASS 0:16:16:0:9:7:0:0:PASS
jpayne@0 108 gi|9626243|ref|NC_001416.1| 21320 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:12:14:0:0:PASS 1:25:0:25:0:0:12:13:PASS 0:8:8:0:8:0:0:0:PASS 0:25:25:0:9:16:0:0:PASS
jpayne@0 109 gi|9626243|ref|NC_001416.1| 21653 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:24:1:10:14:1:0:PASS 0:23:22:1:8:14:1:0:PASS 1:22:0:22:0:0:16:6:PASS 0:19:19:0:10:9:0:0:PASS
jpayne@0 110 gi|9626243|ref|NC_001416.1| 22220 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:10:11:0:0:PASS 1:28:0:28:0:0:17:11:PASS 0:21:20:1:11:9:0:1:PASS 0:23:22:1:8:14:0:1:PASS
jpayne@0 111 gi|9626243|ref|NC_001416.1| 22357 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:10:8:0:0:PASS 0:17:17:0:6:11:0:0:PASS 0:22:22:0:6:16:0:0:PASS 1:21:0:21:0:0:11:10:PASS
jpayne@0 112 gi|9626243|ref|NC_001416.1| 22747 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:11:10:0:0:PASS 1:19:0:19:0:0:7:12:PASS 0:15:15:0:6:9:0:0:PASS 0:21:21:0:8:13:0:0:PASS
jpayne@0 113 gi|9626243|ref|NC_001416.1| 23362 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:14:0:14:0:0:5:9:PASS 0:21:20:1:9:11:1:0:PASS 0:4:4:0:0:4:0:0:PASS 0:24:24:0:11:13:0:0:PASS
jpayne@0 114 gi|9626243|ref|NC_001416.1| 23457 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:10:18:0:0:PASS 1:20:0:19:0:0:12:7:PASS 0:10:10:0:10:0:0:0:PASS 0:26:25:1:12:13:1:0:PASS
jpayne@0 115 gi|9626243|ref|NC_001416.1| 24043 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:25:1:11:14:1:0:PASS 0:23:23:0:12:11:0:0:PASS 0:21:21:0:13:8:0:0:PASS 1:15:0:15:0:0:7:8:PASS
jpayne@0 116 gi|9626243|ref|NC_001416.1| 24319 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:7:12:PASS 0:21:20:1:9:11:1:0:PASS 0:27:26:1:13:13:0:1:PASS 0:21:21:0:11:10:0:0:PASS
jpayne@0 117 gi|9626243|ref|NC_001416.1| 24766 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:8:11:PASS 0:19:19:0:7:12:0:0:PASS 0:19:19:0:6:13:0:0:PASS 0:14:14:0:5:9:0:0:PASS
jpayne@0 118 gi|9626243|ref|NC_001416.1| 24930 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:20:1:10:10:1:0:PASS 0:15:15:0:8:7:0:0:PASS 1:26:0:26:0:0:12:14:PASS 0:10:9:1:4:5:1:0:PASS
jpayne@0 119 gi|9626243|ref|NC_001416.1| 25005 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:20:1:11:9:1:0:PASS 1:12:0:12:0:0:6:6:PASS 0:22:22:0:10:12:0:0:PASS 0:16:16:0:10:6:0:0:PASS
jpayne@0 120 gi|9626243|ref|NC_001416.1| 25158 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:21:1:10:11:1:0:PASS 1:22:0:22:0:0:11:11:PASS 0:15:15:0:10:5:0:0:PASS 0:21:20:1:12:8:0:1:PASS
jpayne@0 121 gi|9626243|ref|NC_001416.1| 25645 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:16:0:7:9:0:0:PASS 1:26:0:26:0:0:11:15:PASS 0:21:21:0:10:11:0:0:PASS 0:26:26:0:13:13:0:0:PASS
jpayne@0 122 gi|9626243|ref|NC_001416.1| 26173 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:18:1:8:10:1:0:PASS 1:21:0:21:0:0:10:11:PASS 0:31:28:3:10:18:2:1:PASS 0:25:25:0:11:14:0:0:PASS
jpayne@0 123 gi|9626243|ref|NC_001416.1| 26728 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:15:11:0:0:PASS 0:28:28:0:12:16:0:0:PASS 1:25:0:25:0:0:13:12:PASS 0:22:22:0:9:13:0:0:PASS
jpayne@0 124 gi|9626243|ref|NC_001416.1| 26972 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:20:6:0:0:PASS 0:26:25:1:11:14:1:0:PASS 0:30:30:0:14:16:0:0:PASS 1:22:1:21:1:0:11:10:PASS
jpayne@0 125 gi|9626243|ref|NC_001416.1| 27412 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:8:17:0:0:PASS 0:24:24:0:13:11:0:0:PASS 1:15:0:15:0:0:6:9:PASS 0:15:15:0:7:8:0:0:PASS
jpayne@0 126 gi|9626243|ref|NC_001416.1| 27539 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:29:0:16:13:0:0:PASS 0:31:31:0:13:18:0:0:PASS 0:15:15:0:11:4:0:0:PASS 1:11:0:11:0:0:5:6:PASS
jpayne@0 127 gi|9626243|ref|NC_001416.1| 27661 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:14:9:0:0:PASS 1:25:0:24:0:0:14:10:PASS 0:15:15:0:7:8:0:0:PASS 0:18:18:0:10:8:0:0:PASS
jpayne@0 128 gi|9626243|ref|NC_001416.1| 27722 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:9:16:0:0:PASS 0:30:29:1:12:17:1:0:PASS 0:19:18:1:6:12:1:0:PASS 1:26:0:26:0:0:16:10:PASS
jpayne@0 129 gi|9626243|ref|NC_001416.1| 27790 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:20:0:19:0:0:8:11:PASS 0:27:26:1:13:13:1:0:PASS 0:21:21:0:11:10:0:0:PASS 0:19:19:0:14:5:0:0:PASS
jpayne@0 130 gi|9626243|ref|NC_001416.1| 27825 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:13:11:0:0:PASS 0:23:23:0:14:9:0:0:PASS 0:23:23:0:14:9:0:0:PASS 1:22:0:22:0:0:14:8:PASS
jpayne@0 131 gi|9626243|ref|NC_001416.1| 27834 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:15:1:4:11:0:1:PASS 0:32:32:0:18:14:0:0:PASS 1:16:0:15:0:0:10:5:PASS 0:21:20:1:11:9:1:0:PASS
jpayne@0 132 gi|9626243|ref|NC_001416.1| 28045 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:24:2:15:9:0:2:PASS 1:25:0:25:0:0:13:12:PASS 0:29:29:0:14:15:0:0:PASS 0:18:18:0:9:9:0:0:PASS
jpayne@0 133 gi|9626243|ref|NC_001416.1| 28362 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:8:17:0:0:PASS 1:22:0:22:0:0:12:10:PASS 0:23:23:0:8:15:0:0:PASS 0:13:13:0:13:0:0:0:PASS
jpayne@0 134 gi|9626243|ref|NC_001416.1| 29265 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:13:11:0:0:PASS 0:21:21:0:13:8:0:0:PASS 0:3:2:1:2:0:0:1:PASS 1:28:0:27:0:0:9:18:PASS
jpayne@0 135 gi|9626243|ref|NC_001416.1| 29411 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:18:10:0:0:PASS 1:31:0:31:0:0:15:16:PASS 0:18:18:0:10:8:0:0:PASS 0:36:35:1:17:18:1:0:PASS
jpayne@0 136 gi|9626243|ref|NC_001416.1| 29435 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:33:33:0:16:17:0:0:PASS 0:29:27:2:12:15:1:1:PASS 1:18:0:18:0:0:11:7:PASS 0:32:31:1:15:16:1:0:PASS
jpayne@0 137 gi|9626243|ref|NC_001416.1| 29891 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:21:0:21:0:0:9:12:PASS 0:19:19:0:10:9:0:0:PASS 0:30:29:1:16:13:0:1:PASS 0:29:28:1:15:13:1:0:PASS
jpayne@0 138 gi|9626243|ref|NC_001416.1| 30125 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:20:20:0:11:9:0:0:PASS 1:21:0:21:0:0:11:10:PASS 0:29:29:0:20:9:0:0:PASS 0:31:29:2:11:18:1:1:PASS
jpayne@0 139 gi|9626243|ref|NC_001416.1| 30757 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:23:1:8:15:1:0:PASS 0:22:22:0:9:13:0:0:PASS 1:24:0:24:0:0:10:14:PASS 0:28:28:0:13:15:0:0:PASS
jpayne@0 140 gi|9626243|ref|NC_001416.1| 30890 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:12:16:0:0:PASS 0:23:23:0:11:12:0:0:PASS 1:18:0:17:0:0:7:10:PASS 0:24:24:0:11:13:0:0:PASS
jpayne@0 141 gi|9626243|ref|NC_001416.1| 31328 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:15:14:1:7:7:0:1:PASS 0:21:21:0:11:10:0:0:PASS 1:21:0:21:0:0:9:12:PASS 0:9:9:0:9:0:0:0:PASS
jpayne@0 142 gi|9626243|ref|NC_001416.1| 31363 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:12:11:0:0:PASS 0:22:22:0:10:12:0:0:PASS 0:31:31:0:14:17:0:0:PASS 1:9:0:9:0:0:8:1:PASS
jpayne@0 143 gi|9626243|ref|NC_001416.1| 31551 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:16:0:16:0:0:8:8:PASS 0:21:21:0:10:11:0:0:PASS 0:26:26:0:14:12:0:0:PASS 0:21:21:0:14:7:0:0:PASS
jpayne@0 144 gi|9626243|ref|NC_001416.1| 32086 . T A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:17:1:16:1:0:7:9:PASS 0:26:25:1:10:15:0:1:PASS 0:17:17:0:10:7:0:0:PASS 0:19:19:0:10:9:0:0:PASS
jpayne@0 145 gi|9626243|ref|NC_001416.1| 32660 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:14:10:0:0:PASS 0:21:20:1:12:8:1:0:PASS 1:17:0:17:0:0:11:6:PASS 0:24:23:1:12:11:1:0:PASS
jpayne@0 146 gi|9626243|ref|NC_001416.1| 33000 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:18:0:18:0:0:8:10:PASS 0:15:14:1:10:4:1:0:PASS 0:15:15:0:9:6:0:0:PASS 0:27:26:1:12:14:0:1:PASS
jpayne@0 147 gi|9626243|ref|NC_001416.1| 33591 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:30:0:30:0:0:16:14:PASS 0:26:25:1:11:14:1:0:PASS 0:27:27:0:14:13:0:0:PASS 0:19:19:0:9:10:0:0:PASS
jpayne@0 148 gi|9626243|ref|NC_001416.1| 33612 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:29:0:14:15:0:0:PASS 0:25:24:1:8:16:1:0:PASS 0:22:22:0:14:8:0:0:PASS 1:19:0:18:0:0:7:11:PASS
jpayne@0 149 gi|9626243|ref|NC_001416.1| 33865 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:12:13:0:0:PASS 0:24:24:0:11:13:0:0:PASS 1:28:0:28:0:0:15:13:PASS 0:21:21:0:12:9:0:0:PASS
jpayne@0 150 gi|9626243|ref|NC_001416.1| 34137 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:27:0:13:14:0:0:PASS 1:34:0:33:0:0:18:15:PASS 0:22:21:1:8:13:1:0:PASS 0:24:24:0:13:11:0:0:PASS
jpayne@0 151 gi|9626243|ref|NC_001416.1| 34370 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:23:0:22:0:0:10:12:PASS 0:31:31:0:12:19:0:0:PASS 0:29:29:0:12:17:0:0:PASS 0:32:31:1:15:16:1:0:PASS
jpayne@0 152 gi|9626243|ref|NC_001416.1| 34812 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:16:0:15:0:0:11:4:PASS 0:18:18:0:7:11:0:0:PASS 0:30:29:1:11:18:1:0:PASS 0:31:31:0:12:19:0:0:PASS
jpayne@0 153 gi|9626243|ref|NC_001416.1| 34920 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:16:0:16:0:0:9:7:PASS 0:23:23:0:12:11:0:0:PASS 0:24:24:0:12:12:0:0:PASS 0:22:22:0:6:16:0:0:PASS
jpayne@0 154 gi|9626243|ref|NC_001416.1| 35148 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:16:0:16:0:0:10:6:PASS 0:28:28:0:13:15:0:0:PASS 0:31:30:1:15:15:0:1:PASS 0:17:17:0:11:6:0:0:PASS
jpayne@0 155 gi|9626243|ref|NC_001416.1| 35802 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:5:14:0:0:PASS 0:23:23:0:15:8:0:0:PASS 1:28:0:28:0:0:13:15:PASS 0:21:21:0:7:14:0:0:PASS
jpayne@0 156 gi|9626243|ref|NC_001416.1| 35907 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:16:0:1:15:0:0:PASS 1:32:0:30:0:0:19:11:PASS 0:21:21:0:11:10:0:0:PASS 0:19:18:1:12:6:0:1:PASS
jpayne@0 157 gi|9626243|ref|NC_001416.1| 36010 . C T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:9:0:9:0:0:0:9:PASS 0:28:28:0:12:16:0:0:PASS 0:26:26:0:14:12:0:0:PASS 0:23:23:0:11:12:0:0:PASS
jpayne@0 158 gi|9626243|ref|NC_001416.1| 36169 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:6:6:0:4:2:0:0:PASS 0:29:28:1:15:13:0:1:PASS 1:15:0:15:0:0:5:10:PASS 0:28:28:0:10:18:0:0:PASS
jpayne@0 159 gi|9626243|ref|NC_001416.1| 36642 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:15:15:0:2:13:0:0:PASS 0:26:26:0:14:12:0:0:PASS 0:19:18:1:10:8:1:0:PASS 1:17:0:17:0:0:2:15:PASS
jpayne@0 160 gi|9626243|ref|NC_001416.1| 37208 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:8:11:PASS 0:26:26:0:19:7:0:0:PASS 0:23:23:0:13:10:0:0:PASS 0:25:25:0:14:11:0:0:PASS
jpayne@0 161 gi|9626243|ref|NC_001416.1| 37387 . A T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:12:10:0:0:PASS 0:29:29:0:13:16:0:0:PASS 0:24:24:0:11:13:0:0:PASS 1:15:0:15:0:0:7:8:PASS
jpayne@0 162 gi|9626243|ref|NC_001416.1| 37519 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:20:2:8:12:2:0:PASS 0:19:19:0:10:9:0:0:PASS 1:13:0:13:0:0:6:7:PASS 0:19:18:1:12:6:1:0:PASS
jpayne@0 163 gi|9626243|ref|NC_001416.1| 37898 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:10:8:0:0:PASS 0:29:28:1:14:14:1:0:PASS 1:27:0:26:0:0:8:18:PASS 0:16:15:1:11:4:0:1:PASS
jpayne@0 164 gi|9626243|ref|NC_001416.1| 38073 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:11:11:0:0:PASS 0:27:26:1:15:11:0:1:PASS 1:25:0:24:0:0:17:7:PASS 0:14:14:0:9:5:0:0:PASS
jpayne@0 165 gi|9626243|ref|NC_001416.1| 38165 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:29:0:29:0:0:19:10:PASS 0:19:18:1:14:4:0:1:PASS 0:17:16:1:11:5:0:1:PASS 0:18:18:0:7:11:0:0:PASS
jpayne@0 166 gi|9626243|ref|NC_001416.1| 38575 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:14:13:1:7:6:1:0:PASS 1:21:0:21:0:0:10:11:PASS 0:25:25:0:14:11:0:0:PASS 0:24:23:1:16:7:0:1:PASS
jpayne@0 167 gi|9626243|ref|NC_001416.1| 39003 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:9:8:1:8:0:1:0:PASS 0:16:16:0:6:10:0:0:PASS 1:17:0:17:0:0:9:8:PASS 0:25:25:0:14:11:0:0:PASS
jpayne@0 168 gi|9626243|ref|NC_001416.1| 39206 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:12:10:0:0:PASS 1:20:0:19:0:0:7:12:PASS 0:20:20:0:8:12:0:0:PASS 0:25:25:0:11:14:0:0:PASS
jpayne@0 169 gi|9626243|ref|NC_001416.1| 39484 . C A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:13:10:0:0:PASS 1:20:0:20:0:0:12:8:PASS 0:20:20:0:7:13:0:0:PASS 0:21:21:0:10:11:0:0:PASS
jpayne@0 170 gi|9626243|ref|NC_001416.1| 39485 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:20:0:20:0:0:10:10:PASS 0:21:21:0:14:7:0:0:PASS 0:16:16:0:4:12:0:0:PASS 0:19:19:0:7:12:0:0:PASS
jpayne@0 171 gi|9626243|ref|NC_001416.1| 40457 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:28:1:27:1:0:11:16:PASS 0:32:31:1:15:16:1:0:PASS 0:25:24:1:7:17:1:0:PASS 0:30:30:0:15:15:0:0:PASS
jpayne@0 172 gi|9626243|ref|NC_001416.1| 40835 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:11:7:0:0:PASS 0:33:33:0:17:16:0:0:PASS 0:28:28:0:17:11:0:0:PASS 1:25:0:25:0:0:16:9:PASS
jpayne@0 173 gi|9626243|ref|NC_001416.1| 40984 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:12:10:0:0:PASS 0:19:19:0:7:12:0:0:PASS 0:37:36:1:20:16:0:1:PASS 1:22:0:21:0:0:12:9:PASS
jpayne@0 174 gi|9626243|ref|NC_001416.1| 41064 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:14:12:0:0:PASS 0:31:31:0:17:14:0:0:PASS 0:30:30:0:15:15:0:0:PASS 1:22:0:21:0:0:10:11:PASS
jpayne@0 175 gi|9626243|ref|NC_001416.1| 41448 . A G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:34:34:0:14:20:0:0:PASS 0:26:26:0:12:14:0:0:PASS 1:21:0:21:0:0:8:13:PASS 0:19:18:1:9:9:1:0:PASS
jpayne@0 176 gi|9626243|ref|NC_001416.1| 41954 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:13:10:0:0:PASS 0:32:32:0:16:16:0:0:PASS 0:20:19:1:6:13:1:0:PASS 1:23:0:23:0:0:11:12:PASS
jpayne@0 177 gi|9626243|ref|NC_001416.1| 42439 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:28:0:28:0:0:20:8:PASS 0:23:23:0:13:10:0:0:PASS 0:20:20:0:11:9:0:0:PASS 0:25:25:0:11:14:0:0:PASS
jpayne@0 178 gi|9626243|ref|NC_001416.1| 43306 . T G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:33:0:32:0:0:12:20:PASS 0:29:29:0:13:16:0:0:PASS 0:23:23:0:6:17:0:0:PASS 0:28:28:0:10:18:0:0:PASS
jpayne@0 179 gi|9626243|ref|NC_001416.1| 43470 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:23:1:12:11:0:1:PASS 1:25:0:25:0:0:14:11:PASS 0:25:25:0:14:11:0:0:PASS 0:27:26:1:17:9:0:1:PASS
jpayne@0 180 gi|9626243|ref|NC_001416.1| 44134 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:14:14:0:0:PASS 1:22:0:21:0:0:12:9:PASS 0:20:20:0:10:10:0:0:PASS 0:27:26:1:13:13:0:1:PASS
jpayne@0 181 gi|9626243|ref|NC_001416.1| 44201 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:12:16:0:0:PASS 0:30:30:0:13:17:0:0:PASS 0:25:25:0:16:9:0:0:PASS 1:25:0:24:0:0:15:9:PASS
jpayne@0 182 gi|9626243|ref|NC_001416.1| 44413 . G T . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:29:0:15:14:0:0:PASS 1:32:0:32:0:0:13:19:PASS 0:23:23:0:9:14:0:0:PASS 0:15:15:0:1:14:0:0:PASS
jpayne@0 183 gi|9626243|ref|NC_001416.1| 45364 . A C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:31:0:18:13:0:0:PASS 1:27:0:25:0:0:16:9:PASS 0:29:28:1:13:15:1:0:PASS 0:27:26:1:11:15:1:0:PASS
jpayne@0 184 gi|9626243|ref|NC_001416.1| 45409 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:30:30:0:19:11:0:0:PASS 0:26:26:0:13:13:0:0:PASS 0:27:27:0:16:11:0:0:PASS 1:21:0:21:0:0:8:13:PASS
jpayne@0 185 gi|9626243|ref|NC_001416.1| 46237 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:27:0:27:0:0:12:15:PASS 0:19:19:0:3:16:0:0:PASS 0:17:16:1:8:8:0:1:PASS 0:28:26:2:10:16:0:2:PASS
jpayne@0 186 gi|9626243|ref|NC_001416.1| 46283 . C G . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:11:13:0:0:PASS 0:12:12:0:1:11:0:0:PASS 0:25:25:0:11:14:0:0:PASS 1:22:0:22:0:0:11:11:PASS
jpayne@0 187 gi|9626243|ref|NC_001416.1| 46842 . G C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:17:1:4:13:0:1:PASS 0:29:28:1:12:16:1:0:PASS 1:28:0:27:0:0:17:10:PASS 0:25:25:0:10:15:0:0:PASS
jpayne@0 188 gi|9626243|ref|NC_001416.1| 47425 . T C . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:12:11:0:0:PASS 1:19:0:18:0:0:11:7:PASS 0:12:11:1:11:0:1:0:PASS 0:23:23:0:12:11:0:0:PASS
jpayne@0 189 gi|9626243|ref|NC_001416.1| 47893 . G A . PASS NS=4 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:28:0:28:0:0:12:16:PASS 0:11:11:0:5:6:0:0:PASS 0:27:27:0:12:15:0:0:PASS 0:22:22:0:11:11:0:0:PASS