Mercurial > repos > jpayne > snp_pipeline

changeset 47:1667e4c08344

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planemo upload commit 2107f35724b3f897c9414be40a9d14663cba9f4d-dirty
author jpayne
date Tue, 07 May 2019 16:12:09 -0400
parents d273453b30bb
children fc7a28de6aa0
files 1_map_reads.xml 2_call_sites.xml 3_filter_regions.xml 4_merge_sites.xml 5_call_consensus.xml 6_merge_vcfs.xml 7_smp_matrix.xml
diffstat 7 files changed, 11 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/1_map_reads.xml	Tue May 07 16:01:52 2019 -0400
+++ b/1_map_reads.xml	Tue May 07 16:12:09 2019 -0400
@@ -3,8 +3,8 @@
     <requirements>
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="2.3.4">bowtie2</requirement>
-        <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.6.0">python</requirement>
+        <requirement type="package" version="1.9.134">boto3</requirement>
+        <requirement type="package" version="3.7.3">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
--- a/2_call_sites.xml	Tue May 07 16:01:52 2019 -0400
+++ b/2_call_sites.xml	Tue May 07 16:12:09 2019 -0400
@@ -6,8 +6,8 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package">picard</requirement>
         <requirement type="package">varscan</requirement>
-        <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.6.0">python</requirement>
+        <requirement type="package" version="1.9.134">boto3</requirement>
+        <requirement type="package" version="3.7.3">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
     export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
--- a/3_filter_regions.xml	Tue May 07 16:01:52 2019 -0400
+++ b/3_filter_regions.xml	Tue May 07 16:12:09 2019 -0400
@@ -4,8 +4,8 @@
         <requirement type="package" version="1.6">samtools</requirement>
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
-        <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.6.0">python</requirement>
+        <requirement type="package" version="1.9.134">boto3</requirement>
+        <requirement type="package" version="3.7.3">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
--- a/4_merge_sites.xml	Tue May 07 16:01:52 2019 -0400
+++ b/4_merge_sites.xml	Tue May 07 16:12:09 2019 -0400
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.2">samtools</requirement>
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
-        <requirement type="package" version="3.6.0">python</requirement>
+        <requirement type="package" version="3.7.3">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
--- a/5_call_consensus.xml	Tue May 07 16:01:52 2019 -0400
+++ b/5_call_consensus.xml	Tue May 07 16:12:09 2019 -0400
@@ -3,8 +3,8 @@
     <requirements>
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
-        <requirement type="package" version="1.5.11">boto3</requirement>
-        <requirement type="package" version="3.6.0">python</requirement>
+        <requirement type="package" version="1.9.134">boto3</requirement>
+        <requirement type="package" version="3.7.3">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
--- a/6_merge_vcfs.xml	Tue May 07 16:01:52 2019 -0400
+++ b/6_merge_vcfs.xml	Tue May 07 16:12:09 2019 -0400
@@ -6,7 +6,7 @@
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
         <requirement type="package" version="1.6">htslib</requirement>
-        <requirement type="package" version="3.6.0">python</requirement>
+        <requirement type="package" version="3.7.3">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&
--- a/7_smp_matrix.xml	Tue May 07 16:01:52 2019 -0400
+++ b/7_smp_matrix.xml	Tue May 07 16:12:09 2019 -0400
@@ -5,7 +5,7 @@
         <requirement type="package" version="1.0.6">bzip2</requirement>
         <requirement type="package" version="1.0.1">snp-pipeline</requirement>
         <requirement type="package" version="0.2.5">tabix</requirement>
-        <requirement type="package" version="3.6.0">python</requirement>
+        <requirement type="package" version="3.7.3">python</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         export LD_LIBRARY_PATH="\$CONDA_DEFAULT_ENV/lib" &&