Mercurial > repos > jpayne > tableops
annotate job_conf.yml @ 0:402b58f45844 draft default tip
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| author | jpayne |
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| date | Mon, 08 Dec 2025 15:03:06 +0000 |
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planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
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1 runners: |
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2 local: |
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3 load: galaxy.jobs.runners.local:LocalJobRunner |
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4 workers: 16 |
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5 |
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6 # handling: |
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7 # processes: |
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8 # handler0: |
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9 |
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10 execution: |
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11 default: local |
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12 environments: |
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13 local: |
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14 runner: local |
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15 docker_local: |
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16 runner: local |
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17 docker_enabled: true |
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18 # container: "auto" |
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19 docker_volumes: $defaults |
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20 # docker_set_user: null |
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21 docker_run_extra_arguments: "--entrypoint ''" |
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22 docker_set_user: root |
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23 |
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24 tools: |
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25 - id: table-sort |
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26 environment: docker_local |
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27 - id: table-union |
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28 environment: docker_local |
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29 - id: table-summary |
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30 environment: docker_local |
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31 |
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32 limits: |
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33 - |
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34 # Amount of time a job can run (in any environment) before it |
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35 # will be terminated by Galaxy. |
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36 type: walltime |
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37 value: '01:00:00' |
