annotate job_conf.yml @ 0:402b58f45844 draft default tip

planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
author jpayne
date Mon, 08 Dec 2025 15:03:06 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
1 runners:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
2 local:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
3 load: galaxy.jobs.runners.local:LocalJobRunner
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
4 workers: 16
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
5
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
6 # handling:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
7 # processes:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
8 # handler0:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
9
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
10 execution:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
11 default: local
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
12 environments:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
13 local:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
14 runner: local
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
15 docker_local:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
16 runner: local
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
17 docker_enabled: true
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
18 # container: "auto"
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
19 docker_volumes: $defaults
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
20 # docker_set_user: null
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
21 docker_run_extra_arguments: "--entrypoint ''"
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
22 docker_set_user: root
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
23
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
24 tools:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
25 - id: table-sort
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
26 environment: docker_local
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
27 - id: table-union
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
28 environment: docker_local
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
29 - id: table-summary
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
30 environment: docker_local
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
31
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
32 limits:
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
33 -
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
34 # Amount of time a job can run (in any environment) before it
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
35 # will be terminated by Galaxy.
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
36 type: walltime
402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
jpayne
parents:
diff changeset
37 value: '01:00:00'