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annotate table-sort.xml @ 0:402b58f45844 draft default tip

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planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
author jpayne
date Mon, 08 Dec 2025 15:03:06 +0000
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402b58f45844 planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
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1 <tool id="table-sort" name="Table Sort: Sort tabular dataset" version="0.1.0">
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2 <description>on specified header or headers</description>
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3 <requirements>
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4 <container type="docker">cfsanbiostatistics/tableops:latest</container>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 cat $table | python $__tool_directory__/table-sort.py $headers > $sorted
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8 ]]></command>
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9 <inputs>
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10 <param name="table" format="tsv" label="Table in TSV format to sort." type="data" />
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11 <param name="headers" type="text" label="Space-delimited list of headers on which to sort." />
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12 </inputs>
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13 <outputs>
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14 <data name="sorted" format="tsv,tabular" label="Sorted table" />
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15 </outputs>
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16 <tests>
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17 <test>
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18 <param name="table" value="combined.tsv" ftype="tsv" />
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19 <param name="headers" value="flavor" />
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20 <output name="sorted" value="sorted.tsv"/>
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21 </test>
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22 <test>
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23 <param name="table" value="sort_test_multiple.txt" ftype="tsv" />
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24 <param name="headers" value="A D" />
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25 <output name="sorted" value="sort_test_multiple_sorted.txt"/>
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26 </test>
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27 </tests>
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28 <help><![CDATA[
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29 Sort a table, ascending, by one or more rows.
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30 ]]></help>
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31
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32 <citations>
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33 </citations>
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34 </tool>