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comparison table-sort.xml @ 0:402b58f45844 draft default tip

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planemo upload commit 9cc4dc1db55299bf92ec6bd359161ece4592bd16-dirty
author jpayne
date Mon, 08 Dec 2025 15:03:06 +0000
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1 <tool id="table-sort" name="Table Sort: Sort tabular dataset" version="0.1.0">
2 <description>on specified header or headers</description>
3 <requirements>
4 <container type="docker">cfsanbiostatistics/tableops:latest</container>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 cat $table | python $__tool_directory__/table-sort.py $headers > $sorted
8 ]]></command>
9 <inputs>
10 <param name="table" format="tsv" label="Table in TSV format to sort." type="data" />
11 <param name="headers" type="text" label="Space-delimited list of headers on which to sort." />
12 </inputs>
13 <outputs>
14 <data name="sorted" format="tsv,tabular" label="Sorted table" />
15 </outputs>
16 <tests>
17 <test>
18 <param name="table" value="combined.tsv" ftype="tsv" />
19 <param name="headers" value="flavor" />
20 <output name="sorted" value="sorted.tsv"/>
21 </test>
22 <test>
23 <param name="table" value="sort_test_multiple.txt" ftype="tsv" />
24 <param name="headers" value="A D" />
25 <output name="sorted" value="sort_test_multiple_sorted.txt"/>
26 </test>
27 </tests>
28 <help><![CDATA[
29 Sort a table, ascending, by one or more rows.
30 ]]></help>
31
32 <citations>
33 </citations>
34 </tool>