Mercurial > repos > kkonganti > cfsan_bettercallsal
annotate 0.7.0/conf/base.config @ 19:4b304d77bbfb
planemo upload
| author | kkonganti |
|---|---|
| date | Mon, 15 Jul 2024 11:20:22 -0400 |
| parents | 0e7a0053e4a6 |
| children |
| rev | line source |
|---|---|
| kkonganti@17 | 1 plugins { |
| kkonganti@17 | 2 id 'nf-amazon' |
| kkonganti@17 | 3 } |
| kkonganti@17 | 4 |
| kkonganti@17 | 5 params { |
| kkonganti@17 | 6 fs = File.separator |
| kkonganti@17 | 7 cfsanpipename = 'CPIPES' |
| kkonganti@17 | 8 center = 'CFSAN, FDA.' |
| kkonganti@17 | 9 libs = "${projectDir}${params.fs}lib" |
| kkonganti@17 | 10 modules = "${projectDir}${params.fs}modules" |
| kkonganti@17 | 11 projectconf = "${projectDir}${params.fs}conf" |
| kkonganti@17 | 12 assetsdir = "${projectDir}${params.fs}assets" |
| kkonganti@17 | 13 subworkflows = "${projectDir}${params.fs}subworkflows" |
| kkonganti@17 | 14 workflows = "${projectDir}${params.fs}workflows" |
| kkonganti@17 | 15 workflowsconf = "${workflows}${params.fs}conf" |
| kkonganti@17 | 16 routines = "${libs}${params.fs}routines" |
| kkonganti@17 | 17 toolshelp = "${libs}${params.fs}help" |
| kkonganti@17 | 18 swmodulepath = "${params.fs}nfs${params.fs}software${params.fs}modules" |
| kkonganti@17 | 19 tracereportsdir = "${launchDir}${params.fs}${cfsanpipename}-${params.pipeline}${params.fs}nextflow-reports" |
| kkonganti@17 | 20 dummyfile = "${projectDir}${params.fs}assets${params.fs}dummy_file.txt" |
| kkonganti@17 | 21 dummyfile2 = "${projectDir}${params.fs}assets${params.fs}dummy_file2.txt" |
| kkonganti@17 | 22 max_cpus = 10 |
| kkonganti@17 | 23 linewidth = 80 |
| kkonganti@17 | 24 pad = 32 |
| kkonganti@17 | 25 pipeline = null |
| kkonganti@17 | 26 help = null |
| kkonganti@17 | 27 input = null |
| kkonganti@17 | 28 output = null |
| kkonganti@17 | 29 metadata = null |
| kkonganti@17 | 30 publish_dir_mode = "copy" |
| kkonganti@17 | 31 publish_dir_overwrite = true |
| kkonganti@17 | 32 user_email = null |
| kkonganti@17 | 33 } |
| kkonganti@17 | 34 |
| kkonganti@17 | 35 dag { |
| kkonganti@17 | 36 enabled = true |
| kkonganti@17 | 37 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_dag.html" |
| kkonganti@17 | 38 overwrite = true |
| kkonganti@17 | 39 } |
| kkonganti@17 | 40 |
| kkonganti@17 | 41 report { |
| kkonganti@17 | 42 enabled = true |
| kkonganti@17 | 43 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_report.html" |
| kkonganti@17 | 44 overwrite = true |
| kkonganti@17 | 45 } |
| kkonganti@17 | 46 |
| kkonganti@17 | 47 trace { |
| kkonganti@17 | 48 enabled = true |
| kkonganti@17 | 49 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_trace.txt" |
| kkonganti@17 | 50 overwrite = true |
| kkonganti@17 | 51 } |
| kkonganti@17 | 52 |
| kkonganti@17 | 53 timeline { |
| kkonganti@17 | 54 enabled = true |
| kkonganti@17 | 55 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_timeline.html" |
| kkonganti@17 | 56 overwrite = true |
| kkonganti@17 | 57 } |
| kkonganti@17 | 58 |