Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison 0.7.0/conf/computeinfra.config @ 17:0e7a0053e4a6

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planemo upload
author kkonganti
date Mon, 15 Jul 2024 10:42:02 -0400
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children 133571bf891f
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16:b90e5a7a3d4f 17:0e7a0053e4a6
1 standard {
2 process.executor = 'local'
3 process.cpus = 1
4 params.enable_conda = false
5 params.enable_module = true
6 singularity.enabled = false
7 docker.enabled = false
8 }
9
10 stdkondagac {
11 process.executor = 'local'
12 process.cpus = 4
13 params.enable_conda = true
14 conda.enabled = true
15 conda.useMicromamba = true
16 params.enable_module = false
17 singularity.enabled = false
18 docker.enabled = false
19 }
20
21 stdcingularitygac {
22 process.executor = 'local'
23 process.cpus = 4
24 params.enable_conda = false
25 params.enable_module = false
26 singularity.enabled = true
27 singularity.autoMounts = true
28 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
29 docker.enabled = false
30 }
31
32 raven {
33 process.executor = 'slurm'
34 process.queue = 'prod'
35 process.memory = '10GB'
36 process.cpus = 4
37 params.enable_conda = false
38 params.enable_module = true
39 singularity.enabled = false
40 docker.enabled = false
41 clusterOptions = '--signal B:USR2'
42 }
43
44 eprod {
45 process.executor = 'slurm'
46 process.queue = 'combined'
47 process.memory = '10GB'
48 process.cpus = 4
49 params.enable_conda = false
50 params.enable_module = true
51 singularity.enabled = false
52 docker.enabled = false
53 clusterOptions = '--signal B:USR2'
54 }
55
56 eprodkonda {
57 process.executor = 'slurm'
58 process.queue = 'lowmem,midmem,bigmem'
59 process.memory = '10GB'
60 process.cpus = 4
61 params.enable_conda = true
62 conda.enabled = true
63 conda.useMicromamba = true
64 params.enable_module = false
65 singularity.enabled = false
66 singularity.autoMounts = true
67 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
68 docker.enabled = false
69 clusterOptions = '--signal B:USR2'
70 }
71
72 eprodcingularity {
73 process.executor = 'slurm'
74 process.queue = 'lowmem,midmem,bigmem'
75 process.memory = '10GB'
76 process.cpus = 4
77 params.enable_conda = false
78 params.enable_module = false
79 singularity.enabled = true
80 singularity.autoMounts = true
81 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
82 docker.enabled = false
83 clusterOptions = '--signal B:USR2'
84 }
85
86 cingularity {
87 process.executor = 'slurm'
88 process.queue = 'prod'
89 process.memory = '10GB'
90 process.cpus = 4
91 singularity.enabled = true
92 singularity.autoMounts = true
93 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
94 docker.enabled = false
95 params.enable_conda = false
96 params.enable_module = false
97 clusterOptions = '--signal B:USR2'
98 }
99
100 cingularitygac {
101 process.executor = 'slurm'
102 executor.$slurm.exitReadTimeout = 120000
103 process.queue = 'centriflaken'
104 process.cpus = 4
105 singularity.enabled = true
106 singularity.autoMounts = true
107 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
108 docker.enabled = false
109 params.enable_conda = false
110 params.enable_module = false
111 clusterOptions = '-n 1 --signal B:USR2'
112 }
113
114 konda {
115 process.executor = 'slurm'
116 process.queue = 'prod'
117 process.memory = '10GB'
118 process.cpus = 4
119 singularity.enabled = false
120 docker.enabled = false
121 params.enable_conda = true
122 conda.enabled = true
123 conda.useMicromamba = true
124 params.enable_module = false
125 clusterOptions = '--signal B:USR2'
126 }
127
128 kondagac {
129 process.executor = 'slurm'
130 executor.$slurm.exitReadTimeout = 120000
131 process.queue = 'centriflaken'
132 process.cpus = 4
133 singularity.enabled = false
134 docker.enabled = false
135 params.enable_conda = true
136 conda.enabled = true
137 conda.useMicromamba = true
138 params.enable_module = false
139 clusterOptions = '-n 1 --signal B:USR2'
140 }
141
142 cfsanawsbatch {
143 process.executor = 'awsbatch'
144 process.queue = 'cfsan-nf-batch-job-queue'
145 aws.batch.cliPath = '/home/ec2-user/miniconda/bin/aws'
146 aws.batch.region = 'us-east-1'
147 aws.batch.volumes = ['/hpc/db:/hpc/db:ro', '/hpc/scratch:/hpc/scratch:rw']
148 singularity.enabled = false
149 singularity.autoMounts = true
150 docker.enabled = true
151 params.enable_conda = false
152 conda.enabled = false
153 conda.useMicromamba = false
154 params.enable_module = false
155 }
156
157 gxkubernetes {
158 process.executor = 'k8s'
159 k8s.namespace = 'galaxy'
160 k8s.serviceAccount = 'default'
161 k8s.pod = [
162 [volumeClaim: 's3-centriflaken-claim', mountPath: '/galaxy/cfsan-centriflaken-db'],
163 [volumeClaim: 's3-nextflow-claim', mountPath: '/galaxy/nf-work-dirs'],
164 [volumeClaim: 'galaxy-galaxy-pvc', mountPath: '/galaxy/server/database'],
165 [priorityClassName: 'galaxy-job-priority']
166 ]
167 singularity.enabled = false
168 docker.enabled = true
169 params.enable_conda = false
170 params.enable_module = false
171 }