Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison 0.7.0/workflows/conf/bettercallsal_db.config @ 17:0e7a0053e4a6

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planemo upload
author kkonganti
date Mon, 15 Jul 2024 10:42:02 -0400
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16:b90e5a7a3d4f 17:0e7a0053e4a6
1 params {
2 workflow_conceived_by = 'Kranti Konganti'
3 workflow_built_by = 'Kranti Konganti'
4 workflow_version = '0.7.0'
5 pdg_release = 'PDG000000002.2876'
6 ncbi_asm_suffix = '_genomic.fna.gz'
7 wcomp_serocol = false
8 wcomp_seronamecol = false
9 wcomp_acc_col = false
10 wcomp_target_acc_col = false
11 wcomp_complete_sero = false
12 wcomp_not_null_serovar = false
13 wcomp_num = false
14 wcomp_min_contig_size = false
15 wcomp_i = false
16 wsnp_serocol = false
17 wsnp_seronamecol = false
18 wsnp_acc_col = false
19 wsnp_target_acc_col = false
20 wsnp_complete_sero = true
21 wsnp_not_null_serovar = false
22 wsnp_num = false
23 wsnp_i = "'I 4,[5],12:i:-'"
24 genomes_chunk = 100
25 mashsketch_run = true
26 mashsketch_l = true
27 mashsketch_I = false
28 mashsketch_C = false
29 mashsketch_k = 21
30 mashsketch_s = 1000
31 mashsketch_i = false
32 mashsketch_S = false
33 mashsketch_w = false
34 mashsketch_r = false
35 mashsketch_b = false
36 mashsketch_m = false
37 mashsketch_c = false
38 mashsketch_g = false
39 mashsketch_n = false
40 mashsketch_a = false
41 mashsketch_z = false
42 mashsketch_Z = false
43 }