diff 0.7.0/workflows/conf/bettercallsal_db.config @ 17:0e7a0053e4a6

planemo upload
author kkonganti
date Mon, 15 Jul 2024 10:42:02 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.7.0/workflows/conf/bettercallsal_db.config	Mon Jul 15 10:42:02 2024 -0400
@@ -0,0 +1,43 @@
+params {
+    workflow_conceived_by = 'Kranti Konganti'
+    workflow_built_by = 'Kranti Konganti'
+    workflow_version = '0.7.0'
+    pdg_release = 'PDG000000002.2876'
+    ncbi_asm_suffix = '_genomic.fna.gz'
+    wcomp_serocol = false
+    wcomp_seronamecol = false
+    wcomp_acc_col = false
+    wcomp_target_acc_col = false
+    wcomp_complete_sero = false
+    wcomp_not_null_serovar = false
+    wcomp_num = false
+    wcomp_min_contig_size = false
+    wcomp_i = false 
+    wsnp_serocol = false
+    wsnp_seronamecol = false
+    wsnp_acc_col = false
+    wsnp_target_acc_col = false
+    wsnp_complete_sero = true
+    wsnp_not_null_serovar = false
+    wsnp_num = false
+    wsnp_i = "'I 4,[5],12:i:-'" 
+    genomes_chunk = 100
+    mashsketch_run = true
+    mashsketch_l = true
+    mashsketch_I = false
+    mashsketch_C = false
+    mashsketch_k = 21
+    mashsketch_s = 1000
+    mashsketch_i = false
+    mashsketch_S = false
+    mashsketch_w = false
+    mashsketch_r = false
+    mashsketch_b = false
+    mashsketch_m = false
+    mashsketch_c = false
+    mashsketch_g = false
+    mashsketch_n = false
+    mashsketch_a = false
+    mashsketch_z = false
+    mashsketch_Z = false
+}