Mercurial > repos > kkonganti > cfsan_bettercallsal

comparison 0.5.0/conf/computeinfra.config @ 1:365849f031fd

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"planemo upload"
author kkonganti
date Mon, 05 Jun 2023 18:48:51 -0400
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0:a4b1ee4b68b1 1:365849f031fd
1 standard {
2 process.executor = 'local'
3 process.cpus = 1
4 params.enable_conda = false
5 params.enable_module = true
6 singularity.enabled = false
7 docker.enabled = false
8 }
9
10 stdkondagac {
11 process.executor = 'local'
12 process.cpus = 4
13 params.enable_conda = true
14 conda.enabled = true
15 conda.useMicromamba = true
16 params.enable_module = false
17 singularity.enabled = false
18 docker.enabled = false
19 }
20
21 stdcingularitygac {
22 process.executor = 'local'
23 process.cpus = 4
24 params.enable_conda = false
25 params.enable_module = false
26 singularity.enabled = true
27 singularity.autoMounts = true
28 docker.enabled = false
29 }
30
31 raven {
32 process.executor = 'slurm'
33 process.queue = 'prod'
34 process.memory = '10GB'
35 process.cpus = 4
36 params.enable_conda = false
37 params.enable_module = true
38 singularity.enabled = false
39 docker.enabled = false
40 clusterOptions = '--signal B:USR2'
41 }
42
43 eprod {
44 process.executor = 'slurm'
45 process.queue = 'lowmem,midmem,bigmem'
46 process.memory = '10GB'
47 process.cpus = 4
48 params.enable_conda = false
49 params.enable_module = true
50 singularity.enabled = false
51 docker.enabled = false
52 clusterOptions = '--signal B:USR2'
53 }
54
55 eprodkonda {
56 process.executor = 'slurm'
57 process.queue = 'lowmem,midmem,bigmem'
58 process.memory = '10GB'
59 process.cpus = 4
60 params.enable_conda = true
61 conda.enabled = true
62 conda.useMicromamba = true
63 params.enable_module = false
64 singularity.enabled = false
65 singularity.autoMounts = true
66 docker.enabled = false
67 clusterOptions = '--signal B:USR2'
68 }
69
70 eprodcingularity {
71 process.executor = 'slurm'
72 process.queue = 'lowmem,midmem,bigmem'
73 process.memory = '10GB'
74 process.cpus = 4
75 params.enable_conda = false
76 params.enable_module = false
77 singularity.enabled = true
78 singularity.autoMounts = true
79 docker.enabled = false
80 clusterOptions = '--signal B:USR2'
81 }
82
83 cingularity {
84 process.executor = 'slurm'
85 process.queue = 'prod'
86 process.memory = '10GB'
87 process.cpus = 4
88 singularity.enabled = true
89 singularity.autoMounts = true
90 docker.enabled = false
91 params.enable_conda = false
92 params.enable_module = false
93 clusterOptions = '--signal B:USR2'
94 }
95
96 cingularitygac {
97 process.executor = 'slurm'
98 executor.$slurm.exitReadTimeout = 120000
99 process.queue = 'centriflaken'
100 process.cpus = 4
101 singularity.enabled = true
102 singularity.autoMounts = true
103 docker.enabled = false
104 params.enable_conda = false
105 params.enable_module = false
106 clusterOptions = '-n 1 --signal B:USR2'
107 }
108
109 konda {
110 process.executor = 'slurm'
111 process.queue = 'prod'
112 process.memory = '10GB'
113 process.cpus = 4
114 singularity.enabled = false
115 docker.enabled = false
116 params.enable_conda = true
117 conda.enabled = true
118 conda.useMicromamba = true
119 params.enable_module = false
120 clusterOptions = '--signal B:USR2'
121 }
122
123 kondagac {
124 process.executor = 'slurm'
125 executor.$slurm.exitReadTimeout = 120000
126 process.queue = 'q8cpu'
127 process.cpus = 4
128 singularity.enabled = false
129 docker.enabled = false
130 params.enable_conda = true
131 conda.enabled = true
132 conda.useMicromamba = true
133 params.enable_module = false
134 clusterOptions = '-n 1 --signal B:USR2'
135 }
136
137 cfsanawsbatch {
138 process.executor = 'awsbatch'
139 process.queue = 'cfsan-nf-batch-job-queue'
140 aws.batch.cliPath = '/home/ec2-user/miniconda/bin/aws'
141 aws.batch.region = 'us-east-1'
142 aws.batch.volumes = ['/hpc/db:/hpc/db:ro', '/hpc/scratch:/hpc/scratch:rw']
143 singularity.enabled = false
144 singularity.autoMounts = true
145 docker.enabled = true
146 params.enable_conda = false
147 conda.enabled = false
148 conda.useMicromamba = false
149 params.enable_module = false
150 }