Mercurial > repos > kkonganti > cfsan_bettercallsal

annotate 0.5.0/conf/computeinfra.config @ 1:365849f031fd

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"planemo upload"
author kkonganti
date Mon, 05 Jun 2023 18:48:51 -0400
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kkonganti@1 1 standard {
kkonganti@1 2 process.executor = 'local'
kkonganti@1 3 process.cpus = 1
kkonganti@1 4 params.enable_conda = false
kkonganti@1 5 params.enable_module = true
kkonganti@1 6 singularity.enabled = false
kkonganti@1 7 docker.enabled = false
kkonganti@1 8 }
kkonganti@1 9
kkonganti@1 10 stdkondagac {
kkonganti@1 11 process.executor = 'local'
kkonganti@1 12 process.cpus = 4
kkonganti@1 13 params.enable_conda = true
kkonganti@1 14 conda.enabled = true
kkonganti@1 15 conda.useMicromamba = true
kkonganti@1 16 params.enable_module = false
kkonganti@1 17 singularity.enabled = false
kkonganti@1 18 docker.enabled = false
kkonganti@1 19 }
kkonganti@1 20
kkonganti@1 21 stdcingularitygac {
kkonganti@1 22 process.executor = 'local'
kkonganti@1 23 process.cpus = 4
kkonganti@1 24 params.enable_conda = false
kkonganti@1 25 params.enable_module = false
kkonganti@1 26 singularity.enabled = true
kkonganti@1 27 singularity.autoMounts = true
kkonganti@1 28 docker.enabled = false
kkonganti@1 29 }
kkonganti@1 30
kkonganti@1 31 raven {
kkonganti@1 32 process.executor = 'slurm'
kkonganti@1 33 process.queue = 'prod'
kkonganti@1 34 process.memory = '10GB'
kkonganti@1 35 process.cpus = 4
kkonganti@1 36 params.enable_conda = false
kkonganti@1 37 params.enable_module = true
kkonganti@1 38 singularity.enabled = false
kkonganti@1 39 docker.enabled = false
kkonganti@1 40 clusterOptions = '--signal B:USR2'
kkonganti@1 41 }
kkonganti@1 42
kkonganti@1 43 eprod {
kkonganti@1 44 process.executor = 'slurm'
kkonganti@1 45 process.queue = 'lowmem,midmem,bigmem'
kkonganti@1 46 process.memory = '10GB'
kkonganti@1 47 process.cpus = 4
kkonganti@1 48 params.enable_conda = false
kkonganti@1 49 params.enable_module = true
kkonganti@1 50 singularity.enabled = false
kkonganti@1 51 docker.enabled = false
kkonganti@1 52 clusterOptions = '--signal B:USR2'
kkonganti@1 53 }
kkonganti@1 54
kkonganti@1 55 eprodkonda {
kkonganti@1 56 process.executor = 'slurm'
kkonganti@1 57 process.queue = 'lowmem,midmem,bigmem'
kkonganti@1 58 process.memory = '10GB'
kkonganti@1 59 process.cpus = 4
kkonganti@1 60 params.enable_conda = true
kkonganti@1 61 conda.enabled = true
kkonganti@1 62 conda.useMicromamba = true
kkonganti@1 63 params.enable_module = false
kkonganti@1 64 singularity.enabled = false
kkonganti@1 65 singularity.autoMounts = true
kkonganti@1 66 docker.enabled = false
kkonganti@1 67 clusterOptions = '--signal B:USR2'
kkonganti@1 68 }
kkonganti@1 69
kkonganti@1 70 eprodcingularity {
kkonganti@1 71 process.executor = 'slurm'
kkonganti@1 72 process.queue = 'lowmem,midmem,bigmem'
kkonganti@1 73 process.memory = '10GB'
kkonganti@1 74 process.cpus = 4
kkonganti@1 75 params.enable_conda = false
kkonganti@1 76 params.enable_module = false
kkonganti@1 77 singularity.enabled = true
kkonganti@1 78 singularity.autoMounts = true
kkonganti@1 79 docker.enabled = false
kkonganti@1 80 clusterOptions = '--signal B:USR2'
kkonganti@1 81 }
kkonganti@1 82
kkonganti@1 83 cingularity {
kkonganti@1 84 process.executor = 'slurm'
kkonganti@1 85 process.queue = 'prod'
kkonganti@1 86 process.memory = '10GB'
kkonganti@1 87 process.cpus = 4
kkonganti@1 88 singularity.enabled = true
kkonganti@1 89 singularity.autoMounts = true
kkonganti@1 90 docker.enabled = false
kkonganti@1 91 params.enable_conda = false
kkonganti@1 92 params.enable_module = false
kkonganti@1 93 clusterOptions = '--signal B:USR2'
kkonganti@1 94 }
kkonganti@1 95
kkonganti@1 96 cingularitygac {
kkonganti@1 97 process.executor = 'slurm'
kkonganti@1 98 executor.$slurm.exitReadTimeout = 120000
kkonganti@1 99 process.queue = 'centriflaken'
kkonganti@1 100 process.cpus = 4
kkonganti@1 101 singularity.enabled = true
kkonganti@1 102 singularity.autoMounts = true
kkonganti@1 103 docker.enabled = false
kkonganti@1 104 params.enable_conda = false
kkonganti@1 105 params.enable_module = false
kkonganti@1 106 clusterOptions = '-n 1 --signal B:USR2'
kkonganti@1 107 }
kkonganti@1 108
kkonganti@1 109 konda {
kkonganti@1 110 process.executor = 'slurm'
kkonganti@1 111 process.queue = 'prod'
kkonganti@1 112 process.memory = '10GB'
kkonganti@1 113 process.cpus = 4
kkonganti@1 114 singularity.enabled = false
kkonganti@1 115 docker.enabled = false
kkonganti@1 116 params.enable_conda = true
kkonganti@1 117 conda.enabled = true
kkonganti@1 118 conda.useMicromamba = true
kkonganti@1 119 params.enable_module = false
kkonganti@1 120 clusterOptions = '--signal B:USR2'
kkonganti@1 121 }
kkonganti@1 122
kkonganti@1 123 kondagac {
kkonganti@1 124 process.executor = 'slurm'
kkonganti@1 125 executor.$slurm.exitReadTimeout = 120000
kkonganti@1 126 process.queue = 'q8cpu'
kkonganti@1 127 process.cpus = 4
kkonganti@1 128 singularity.enabled = false
kkonganti@1 129 docker.enabled = false
kkonganti@1 130 params.enable_conda = true
kkonganti@1 131 conda.enabled = true
kkonganti@1 132 conda.useMicromamba = true
kkonganti@1 133 params.enable_module = false
kkonganti@1 134 clusterOptions = '-n 1 --signal B:USR2'
kkonganti@1 135 }
kkonganti@1 136
kkonganti@1 137 cfsanawsbatch {
kkonganti@1 138 process.executor = 'awsbatch'
kkonganti@1 139 process.queue = 'cfsan-nf-batch-job-queue'
kkonganti@1 140 aws.batch.cliPath = '/home/ec2-user/miniconda/bin/aws'
kkonganti@1 141 aws.batch.region = 'us-east-1'
kkonganti@1 142 aws.batch.volumes = ['/hpc/db:/hpc/db:ro', '/hpc/scratch:/hpc/scratch:rw']
kkonganti@1 143 singularity.enabled = false
kkonganti@1 144 singularity.autoMounts = true
kkonganti@1 145 docker.enabled = true
kkonganti@1 146 params.enable_conda = false
kkonganti@1 147 conda.enabled = false
kkonganti@1 148 conda.useMicromamba = false
kkonganti@1 149 params.enable_module = false
kkonganti@1 150 }