diff 0.5.0/modules/custom/dump_software_versions/main.nf @ 1:365849f031fd

"planemo upload"
author kkonganti
date Mon, 05 Jun 2023 18:48:51 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.5.0/modules/custom/dump_software_versions/main.nf	Mon Jun 05 18:48:51 2023 -0400
@@ -0,0 +1,26 @@
+process DUMP_SOFTWARE_VERSIONS {
+    tag "${params.pipeline} software versions"
+    label 'process_pico'
+
+    // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container
+    module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
+    conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null)
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://depot.galaxyproject.org/singularity/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' :
+        'quay.io/biocontainers/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' }"
+
+    input:
+    path versions
+
+    output:
+    path "software_versions.yml"    , emit: yml
+    path "software_versions_mqc.yml", emit: mqc_yml
+    path "versions.yml"             , emit: versions
+
+    when:
+    task.ext.when == null || task.ext.when
+
+    script:
+    def args = task.ext.args ?: ''
+    template 'dumpsoftwareversions.py'
+}
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