Mercurial > repos > kkonganti > cfsan_bettercallsal
diff 0.5.0/modules/custom/dump_software_versions/main.nf @ 1:365849f031fd
"planemo upload"
author | kkonganti |
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date | Mon, 05 Jun 2023 18:48:51 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/0.5.0/modules/custom/dump_software_versions/main.nf Mon Jun 05 18:48:51 2023 -0400 @@ -0,0 +1,26 @@ +process DUMP_SOFTWARE_VERSIONS { + tag "${params.pipeline} software versions" + label 'process_pico' + + // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container + module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null) + conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null) + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://depot.galaxyproject.org/singularity/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' : + 'quay.io/biocontainers/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' }" + + input: + path versions + + output: + path "software_versions.yml" , emit: yml + path "software_versions_mqc.yml", emit: mqc_yml + path "versions.yml" , emit: versions + + when: + task.ext.when == null || task.ext.when + + script: + def args = task.ext.args ?: '' + template 'dumpsoftwareversions.py' +} \ No newline at end of file