Mercurial > repos > kkonganti > cfsan_bettercallsal
view 0.5.0/modules/custom/dump_software_versions/main.nf @ 1:365849f031fd
"planemo upload"
author | kkonganti |
---|---|
date | Mon, 05 Jun 2023 18:48:51 -0400 |
parents | |
children |
line wrap: on
line source
process DUMP_SOFTWARE_VERSIONS { tag "${params.pipeline} software versions" label 'process_pico' // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null) conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' : 'quay.io/biocontainers/mulled-v2-ca258a039fcd88610bc4e297b13703e8be53f5ca:d638c4f85566099ea0c74bc8fddc6f531fe56753-0' }" input: path versions output: path "software_versions.yml" , emit: yml path "software_versions_mqc.yml", emit: mqc_yml path "versions.yml" , emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' template 'dumpsoftwareversions.py' }