Mercurial > repos > kkonganti > cfsan_bettercallsal

changeset 16:b90e5a7a3d4f

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"planemo upload"
author kkonganti
date Thu, 07 Sep 2023 15:22:10 -0400
parents 1972677994a6
children 0e7a0053e4a6
files cfsan_bettercallsal.xml
diffstat 1 files changed, 1 insertions(+), 4 deletions(-) [+]
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line diff
--- a/cfsan_bettercallsal.xml	Thu Sep 07 10:27:12 2023 -0400
+++ b/cfsan_bettercallsal.xml	Thu Sep 07 15:22:10 2023 -0400
@@ -154,10 +154,7 @@
 **Testing and Validation**
 
 The CPIPES - bettercallsal Nextflow pipeline has been wrapped to make it work in Galaxy. It takes in either paired or unpaired short reads list as an input 
-and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq simulated reads and has been shown to call multiple
-Salmonella serotypes with up to ~95% accuracy. The pipeline has also been tested on metagenomics data sets from Peach and Papaya outbreaks as discussed in 
-our preprint (https://www.biorxiv.org/content/10.1101/2023.04.06.535929v1.full). All the original testing and validation was 
-done on the command line on the CFSAN Raven2 HPC Cluster.
+and generates a MultiQC report in the final step. The pipeline has been tested on 2x300 bp MiSeq and 2x150 bp NextSeq simulated reads and has been shown to call multiple Salmonella serotypes with up to ~95% accuracy. The pipeline has also been tested on metagenomics data sets from Peach and Papaya outbreaks as discussed in our publication (https://www.frontiersin.org/articles/10.3389/fmicb.2023.1200983/full). All the original testing and validation was done on the command line on the CFSAN Raven2 HPC Cluster.
 
 
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