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annotate 0.3.0/LICENSE.md @ 92:295c2597a475

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author kkonganti
date Tue, 19 Jul 2022 10:07:24 -0400
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kkonganti@92 1 # CPIPES (CFSAN PIPELINES)
kkonganti@92 2
kkonganti@92 3 ## The modular pipeline repository at CFSAN, FDA
kkonganti@92 4
kkonganti@92 5 **CPIPES** (CFSAN PIPELINES) is a collection of modular pipelines based on **NEXTFLOW**,
kkonganti@92 6 mostly for bioinformatics data analysis at **CFSAN, FDA.**
kkonganti@92 7
kkonganti@92 8 ---
kkonganti@92 9
kkonganti@92 10 ### **LICENSES**
kkonganti@92 11
kkonganti@92 12 \
kkonganti@92 13  
kkonganti@92 14
kkonganti@92 15 **CPIPES** is licensed under:
kkonganti@92 16
kkonganti@92 17 ```text
kkonganti@92 18 MIT License
kkonganti@92 19
kkonganti@92 20 In the U.S.A. Public Domain; elsewhere Copyright (c) 2022 U.S. Food and Drug Administration
kkonganti@92 21
kkonganti@92 22 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@92 23 of this software and associated documentation files (the "Software"), to deal
kkonganti@92 24 in the Software without restriction, including without limitation the rights
kkonganti@92 25 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@92 26 copies of the Software, and to permit persons to whom the Software is
kkonganti@92 27 furnished to do so, subject to the following conditions:
kkonganti@92 28
kkonganti@92 29 The above copyright notice and this permission notice shall be included in all
kkonganti@92 30 copies or substantial portions of the Software.
kkonganti@92 31
kkonganti@92 32 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@92 33 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@92 34 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@92 35 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@92 36 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@92 37 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@92 38 SOFTWARE.
kkonganti@92 39 ```
kkonganti@92 40
kkonganti@92 41 \
kkonganti@92 42  
kkonganti@92 43
kkonganti@92 44 Portions of **CPIPES** are built on modified versions of many tools, scripts and libraries from [nf-core/modules](https://github.com/nf-core/modules) and [nf-core/rnaseq](https://github.com/nf-core/rna-seq) which are originally licensed under:
kkonganti@92 45
kkonganti@92 46 ```text
kkonganti@92 47 MIT License
kkonganti@92 48
kkonganti@92 49 Copyright (c) Philip Ewels
kkonganti@92 50 Copyright (c) Phil Ewels, Rickard Hammarén
kkonganti@92 51
kkonganti@92 52 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@92 53 of this software and associated documentation files (the "Software"), to deal
kkonganti@92 54 in the Software without restriction, including without limitation the rights
kkonganti@92 55 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@92 56 copies of the Software, and to permit persons to whom the Software is
kkonganti@92 57 furnished to do so, subject to the following conditions:
kkonganti@92 58
kkonganti@92 59 The above copyright notice and this permission notice shall be included in all
kkonganti@92 60 copies or substantial portions of the Software.
kkonganti@92 61
kkonganti@92 62 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@92 63 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@92 64 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@92 65 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@92 66 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@92 67 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@92 68 SOFTWARE.
kkonganti@92 69 ```
kkonganti@92 70
kkonganti@92 71 \
kkonganti@92 72  
kkonganti@92 73
kkonganti@92 74 The **MultiQC** report, in addition uses [DataTables](https://datatables.net), which is licensed under:
kkonganti@92 75
kkonganti@92 76 ```text
kkonganti@92 77 MIT License
kkonganti@92 78
kkonganti@92 79 Copyright (C) 2008-2022, SpryMedia Ltd.
kkonganti@92 80
kkonganti@92 81 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@92 82 of this software and associated documentation files (the "Software"), to deal
kkonganti@92 83 in the Software without restriction, including without limitation the rights
kkonganti@92 84 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@92 85 copies of the Software, and to permit persons to whom the Software is
kkonganti@92 86 furnished to do so, subject to the following conditions:
kkonganti@92 87
kkonganti@92 88 The above copyright notice and this permission notice shall be included in all
kkonganti@92 89 copies or substantial portions of the Software.
kkonganti@92 90
kkonganti@92 91 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@92 92 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@92 93 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@92 94 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@92 95 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@92 96 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@92 97 SOFTWARE.
kkonganti@92 98 ```