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annotate 0.4.2/LICENSE.md @ 105:52045ea4679d

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author kkonganti
date Thu, 27 Jun 2024 14:17:26 -0400
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kkonganti@105 1 # CPIPES (CFSAN PIPELINES)
kkonganti@105 2
kkonganti@105 3 ## The modular pipeline repository at CFSAN, FDA
kkonganti@105 4
kkonganti@105 5 **CPIPES** (CFSAN PIPELINES) is a collection of modular pipelines based on **NEXTFLOW**,
kkonganti@105 6 mostly for bioinformatics data analysis at **CFSAN, FDA.**
kkonganti@105 7
kkonganti@105 8 ---
kkonganti@105 9
kkonganti@105 10 ### **LICENSES**
kkonganti@105 11
kkonganti@105 12 \
kkonganti@105 13  
kkonganti@105 14
kkonganti@105 15 **CPIPES** is licensed under:
kkonganti@105 16
kkonganti@105 17 ```text
kkonganti@105 18 MIT License
kkonganti@105 19
kkonganti@105 20 In the U.S.A. Public Domain; elsewhere Copyright (c) 2022 U.S. Food and Drug Administration
kkonganti@105 21
kkonganti@105 22 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@105 23 of this software and associated documentation files (the "Software"), to deal
kkonganti@105 24 in the Software without restriction, including without limitation the rights
kkonganti@105 25 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@105 26 copies of the Software, and to permit persons to whom the Software is
kkonganti@105 27 furnished to do so, subject to the following conditions:
kkonganti@105 28
kkonganti@105 29 The above copyright notice and this permission notice shall be included in all
kkonganti@105 30 copies or substantial portions of the Software.
kkonganti@105 31
kkonganti@105 32 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@105 33 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@105 34 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@105 35 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@105 36 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@105 37 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@105 38 SOFTWARE.
kkonganti@105 39 ```
kkonganti@105 40
kkonganti@105 41 \
kkonganti@105 42  
kkonganti@105 43
kkonganti@105 44 Portions of **CPIPES** are built on modified versions of many tools, scripts and libraries from [nf-core/modules](https://github.com/nf-core/modules) and [nf-core/rnaseq](https://github.com/nf-core/rna-seq) which are originally licensed under:
kkonganti@105 45
kkonganti@105 46 ```text
kkonganti@105 47 MIT License
kkonganti@105 48
kkonganti@105 49 Copyright (c) Philip Ewels
kkonganti@105 50 Copyright (c) Phil Ewels, Rickard Hammarén
kkonganti@105 51
kkonganti@105 52 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@105 53 of this software and associated documentation files (the "Software"), to deal
kkonganti@105 54 in the Software without restriction, including without limitation the rights
kkonganti@105 55 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@105 56 copies of the Software, and to permit persons to whom the Software is
kkonganti@105 57 furnished to do so, subject to the following conditions:
kkonganti@105 58
kkonganti@105 59 The above copyright notice and this permission notice shall be included in all
kkonganti@105 60 copies or substantial portions of the Software.
kkonganti@105 61
kkonganti@105 62 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@105 63 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@105 64 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@105 65 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@105 66 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@105 67 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@105 68 SOFTWARE.
kkonganti@105 69 ```
kkonganti@105 70
kkonganti@105 71 \
kkonganti@105 72  
kkonganti@105 73
kkonganti@105 74 The **MultiQC** report, in addition uses [DataTables](https://datatables.net), which is licensed under:
kkonganti@105 75
kkonganti@105 76 ```text
kkonganti@105 77 MIT License
kkonganti@105 78
kkonganti@105 79 Copyright (C) 2008-2022, SpryMedia Ltd.
kkonganti@105 80
kkonganti@105 81 Permission is hereby granted, free of charge, to any person obtaining a copy
kkonganti@105 82 of this software and associated documentation files (the "Software"), to deal
kkonganti@105 83 in the Software without restriction, including without limitation the rights
kkonganti@105 84 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
kkonganti@105 85 copies of the Software, and to permit persons to whom the Software is
kkonganti@105 86 furnished to do so, subject to the following conditions:
kkonganti@105 87
kkonganti@105 88 The above copyright notice and this permission notice shall be included in all
kkonganti@105 89 copies or substantial portions of the Software.
kkonganti@105 90
kkonganti@105 91 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
kkonganti@105 92 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
kkonganti@105 93 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
kkonganti@105 94 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
kkonganti@105 95 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
kkonganti@105 96 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
kkonganti@105 97 SOFTWARE.
kkonganti@105 98 ```