Mercurial > repos > kkonganti > cfsan_centriflaken
annotate 0.4.0/modules/custom/dump_software_versions/main.nf @ 101:ce6d9548fe89
"planemo upload"
| author | kkonganti |
|---|---|
| date | Thu, 04 Aug 2022 10:45:55 -0400 |
| parents | |
| children | 17890124001d |
| rev | line source |
|---|---|
| kkonganti@101 | 1 process DUMP_SOFTWARE_VERSIONS { |
| kkonganti@101 | 2 tag "${params.pipeline} software versions" |
| kkonganti@101 | 3 label 'process_pico' |
| kkonganti@101 | 4 |
| kkonganti@101 | 5 // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container |
| kkonganti@101 | 6 module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null) |
| kkonganti@101 | 7 conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null) |
| kkonganti@101 | 8 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? |
| kkonganti@101 | 9 'https://depot.galaxyproject.org/singularity/multiqc:1.11--pyhdfd78af_0' : |
| kkonganti@101 | 10 'quay.io/biocontainers/multiqc:1.11--pyhdfd78af_0' }" |
| kkonganti@101 | 11 |
| kkonganti@101 | 12 input: |
| kkonganti@101 | 13 path versions |
| kkonganti@101 | 14 |
| kkonganti@101 | 15 output: |
| kkonganti@101 | 16 path "software_versions.yml" , emit: yml |
| kkonganti@101 | 17 path "software_versions_mqc.yml", emit: mqc_yml |
| kkonganti@101 | 18 path "versions.yml" , emit: versions |
| kkonganti@101 | 19 |
| kkonganti@101 | 20 when: |
| kkonganti@101 | 21 task.ext.when == null || task.ext.when |
| kkonganti@101 | 22 |
| kkonganti@101 | 23 script: |
| kkonganti@101 | 24 def args = task.ext.args ?: '' |
| kkonganti@101 | 25 template 'dumpsoftwareversions.py' |
| kkonganti@101 | 26 } |