Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 2:29a590703d3e

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"planemo upload"
author kkonganti
date Mon, 27 Jun 2022 16:43:05 -0400
parents e0d902b50cff
children 3154e7efa1c4
comparison
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1:e0d902b50cff 2:29a590703d3e
4 <requirement type="package" version="22.04">nextflow</requirement> 4 <requirement type="package" version="22.04">nextflow</requirement>
5 <requirement type="package">graphviz</requirement> 5 <requirement type="package">graphviz</requirement>
6 </requirements> 6 </requirements>
7 <version_command>nextflow -version</version_command> 7 <version_command>nextflow -version</version_command>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 mkdir -p cpipes-input 9 mkdir -p cpipes-input &&
10 #for $input in $LIST 10 #for $input in $LIST
11 ln -sf '$input' './cpipes-input/${input.element_identifier}'; 11 ln -sf '$input' './cpipes-input/${input.element_identifier}';
12 #end for 12 #end for
13 pwd_path=\$(pwd) 13 pwd_path=\$(pwd) &&
14 $__tool_directory__/0.2.1/cpipes 14 $__tool_directory__/0.2.1/cpipes
15 #if (reads.type == "long"): 15 #if (reads.type == "long"):
16 --pipeline centriflaken 16 --pipeline centriflaken
17 #else: 17 #else:
18 --pipeline centriflaken_hy 18 --pipeline centriflaken_hy