Mercurial > repos > kkonganti > cfsan_centriflaken

diff cfsan_centriflaken.xml @ 2:29a590703d3e

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"planemo upload"
author kkonganti
date Mon, 27 Jun 2022 16:43:05 -0400
parents e0d902b50cff
children 3154e7efa1c4
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Mon Jun 27 16:00:59 2022 -0400
+++ b/cfsan_centriflaken.xml	Mon Jun 27 16:43:05 2022 -0400
@@ -6,11 +6,11 @@
     </requirements>    
     <version_command>nextflow -version</version_command>
     <command detect_errors="exit_code"><![CDATA[
-	mkdir -p cpipes-input
+	mkdir -p cpipes-input &&
 	#for $input in $LIST
 	    ln -sf '$input' './cpipes-input/${input.element_identifier}';
 	#end for
-	pwd_path=\$(pwd)
+	pwd_path=\$(pwd) &&
 	$__tool_directory__/0.2.1/cpipes
     #if (reads.type == "long"):
         --pipeline centriflaken