Mercurial > repos > kkonganti > cfsan_centriflaken
comparison 0.3.0/modules/abricate/summary/main.nf @ 95:aefcf9bbaee5
"planemo upload"
| author | kkonganti |
|---|---|
| date | Wed, 20 Jul 2022 09:33:32 -0400 |
| parents | 295c2597a475 |
| children |
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| 94:ca861be31596 | 95:aefcf9bbaee5 |
|---|---|
| 44 $args \\ | 44 $args \\ |
| 45 --summary \${files} \\ | 45 --summary \${files} \\ |
| 46 1> "abricate.\${db}.absum.txt" | 46 1> "abricate.\${db}.absum.txt" |
| 47 | 47 |
| 48 sed -i -e "s/.\${db}.ab.txt//" "abricate.\${db}.absum.txt" | 48 sed -i -e "s/.\${db}.ab.txt//" "abricate.\${db}.absum.txt" |
| 49 sed -i -e 's/.assembly_filtered_contigs.fasta//' "abricate.\${db}.absum.txt" | |
| 49 | 50 |
| 50 filenum=\$((filenum+1)) | 51 filenum=\$((filenum+1)) |
| 51 done | 52 done |
| 52 | 53 |
| 53 cat <<-END_VERSIONS > versions.yml | 54 cat <<-END_VERSIONS > versions.yml |