Mercurial > repos > kkonganti > cfsan_centriflaken

diff 0.3.0/modules/abricate/summary/main.nf @ 95:aefcf9bbaee5

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"planemo upload"
author kkonganti
date Wed, 20 Jul 2022 09:33:32 -0400
parents 295c2597a475
children
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--- a/0.3.0/modules/abricate/summary/main.nf	Tue Jul 19 10:22:51 2022 -0400
+++ b/0.3.0/modules/abricate/summary/main.nf	Wed Jul 20 09:33:32 2022 -0400
@@ -46,6 +46,7 @@
             1> "abricate.\${db}.absum.txt"
 
         sed -i -e "s/.\${db}.ab.txt//" "abricate.\${db}.absum.txt"
+        sed -i -e 's/.assembly_filtered_contigs.fasta//' "abricate.\${db}.absum.txt"
 
         filenum=\$((filenum+1))
     done