Mercurial > repos > kkonganti > cfsan_centriflaken

comparison 0.2.1/nextflow.config @ 7:fc2d7be75a28

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"planemo upload"
author kkonganti
date Tue, 28 Jun 2022 10:44:34 -0400
parents 77494b0fa3c7
children 4f010d01be86
comparison
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6:1e19594944c5 7:fc2d7be75a28
25 // Include modules' conig last. 25 // Include modules' conig last.
26 includeConfig "${pd}${fs}conf${fs}logtheseparams.config" 26 includeConfig "${pd}${fs}conf${fs}logtheseparams.config"
27 includeConfig "${pd}${fs}conf${fs}modules.config" 27 includeConfig "${pd}${fs}conf${fs}modules.config"
28 28
29 // Nextflow runtime profiles 29 // Nextflow runtime profiles
30 conda.cacheDir = '/nfs/home/galaxy/cfsan-centriflaken-db/kondagac_cache' 30 conda.cacheDir = '/tmp'
31 singularity.cacheDir = '/nfs/home/galaxy/cfsan-centriflaken-db/cingularitygac_cache' 31 singularity.cacheDir = '/tmp'
32 32
33 profiles { 33 profiles {
34 standard { 34 standard {
35 process.executor = 'local' 35 process.executor = 'local'
36 process.cpus = 1 36 process.cpus = 1
37 params.enable_conda = false 37 params.enable_conda = false
38 params.enable_module = true 38 params.enable_module = true
39 singularity.enabled = false 39 singularity.enabled = false
40 docker.enabled = false
41 }
42
43 stdkondagac {
44 process.executor = 'local'
45 process.cpus = 4
46 params.enable_conda = true
47 params.enable_module = false
48 singularity.enabled = false
49 docker.enabled = false
50 }
51
52 stdcingularitygac {
53 process.executor = 'local'
54 process.cpus = 4
55 params.enable_conda = false
56 params.enable_module = false
57 singularity.enabled = true
40 docker.enabled = false 58 docker.enabled = false
41 } 59 }
42 60
43 raven { 61 raven {
44 process.executor = 'slurm' 62 process.executor = 'slurm'
65 clusterOptions = '--signal B:USR2' 83 clusterOptions = '--signal B:USR2'
66 } 84 }
67 85
68 cingularitygac { 86 cingularitygac {
69 process.executor = 'slurm' 87 process.executor = 'slurm'
70 executor.$slurm.exitReadTimeout = 60 88 executor.$slurm.exitReadTimeout = 60000
71 process.queue = 'q16cpu' 89 process.queue = 'q16cpu'
72 process.cpus = 4 90 process.cpus = 4
73 singularity.enabled = true 91 singularity.enabled = true
74 singularity.autoMounts = true 92 singularity.autoMounts = true
75 docker.enabled = false 93 docker.enabled = false
90 clusterOptions = '--signal B:USR2' 108 clusterOptions = '--signal B:USR2'
91 } 109 }
92 110
93 kondagac { 111 kondagac {
94 process.executor = 'slurm' 112 process.executor = 'slurm'
95 executor.$slurm.exitReadTimeout = 60 113 executor.$slurm.exitReadTimeout = 60000
96 process.queue = 'q16cpu' 114 process.queue = 'q16cpu'
97 process.cpus = 4 115 process.cpus = 4
98 singularity.enabled = false 116 singularity.enabled = false
99 docker.enabled = false 117 docker.enabled = false
100 params.enable_conda = true 118 params.enable_conda = true