Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 7:fc2d7be75a28

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"planemo upload"
author kkonganti
date Tue, 28 Jun 2022 10:44:34 -0400
parents 1e19594944c5
children 4f010d01be86
files 0.2.1/nextflow.config
diffstat 1 files changed, 22 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/0.2.1/nextflow.config	Tue Jun 28 10:36:51 2022 -0400
+++ b/0.2.1/nextflow.config	Tue Jun 28 10:44:34 2022 -0400
@@ -27,8 +27,8 @@
 includeConfig "${pd}${fs}conf${fs}modules.config"
 
 // Nextflow runtime profiles
-conda.cacheDir = '/nfs/home/galaxy/cfsan-centriflaken-db/kondagac_cache'
-singularity.cacheDir = '/nfs/home/galaxy/cfsan-centriflaken-db/cingularitygac_cache'
+conda.cacheDir = '/tmp'
+singularity.cacheDir = '/tmp'
 
 profiles {
     standard {
@@ -40,6 +40,24 @@
         docker.enabled = false
     }
 
+    stdkondagac {
+        process.executor = 'local'
+        process.cpus = 4
+        params.enable_conda = true
+        params.enable_module = false
+        singularity.enabled = false
+        docker.enabled = false
+    }
+
+    stdcingularitygac {
+        process.executor = 'local'
+        process.cpus = 4
+        params.enable_conda = false
+        params.enable_module = false
+        singularity.enabled = true
+        docker.enabled = false
+    }
+
     raven {
         process.executor = 'slurm'
         process.queue = 'prod'
@@ -67,7 +85,7 @@
 
     cingularitygac {
         process.executor = 'slurm'
-        executor.$slurm.exitReadTimeout = 60
+        executor.$slurm.exitReadTimeout = 60000
         process.queue = 'q16cpu'
         process.cpus = 4
         singularity.enabled = true
@@ -92,7 +110,7 @@
 
     kondagac {
         process.executor = 'slurm'
-        executor.$slurm.exitReadTimeout = 60
+        executor.$slurm.exitReadTimeout = 60000
         process.queue = 'q16cpu'
         process.cpus = 4
         singularity.enabled = false