Mercurial > repos > kkonganti > cfsan_centriflaken

diff cfsan_centriflaken.xml @ 17:1cb92deb15f8

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"planemo upload"
author kkonganti
date Tue, 28 Jun 2022 19:54:23 -0400
parents 589620eec35d
children 4f31b641f6fd
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--- a/cfsan_centriflaken.xml	Tue Jun 28 18:18:17 2022 -0400
+++ b/cfsan_centriflaken.xml	Tue Jun 28 19:54:23 2022 -0400
@@ -60,9 +60,9 @@
         </param>
     </inputs>
     <outputs>
-        <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}">
-            <discover_datasets pattern="(?P&lt;name&gt;.*)\.html" ext="html" assign_primary_output="true" directory="./cpipes-output/${pipeline}-multiqc"/>
-        </data>
+        <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}" from_work_dir="./cpipes-output/${pipeline}-multiqc/multiqc_report.html"/>
+            <!-- <discover_datasets pattern="(?P&lt;name&gt;.*)\.html" ext="html" assign_primary_output="true" directory="./cpipes-output/${pipeline}-multiqc"/> -->
+        <!-- </data> -->
         <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
             <discover_datasets pattern="(?P&lt;designation&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" visible="true" directory="./cpipes-output/${pipeline}-results/kraken2_extract_contigs"/>
         </data>