Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 129:1bb0dacefa6d

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planemo upload
author kkonganti
date Wed, 03 Jul 2024 15:02:23 -0400
parents d4439431d12c
children 04f6ac8ca13c
files cfsan_centriflaken.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Wed Jul 03 15:00:37 2024 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 03 15:02:23 2024 -0400
@@ -73,9 +73,9 @@
     #end if
     -work-dir \${work_dir}
 	-profile gxkubernetes;
-    mv "\${work_dir}/cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html" './multiqc_report.html' > /dev/null 2>&1 || exit 1;
+    mv "\${work_dir}/cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html" './multiqc_report.html' || exit 1;
     mv "\${work_dir}/cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs" kraken2_extract_contigs > /dev/null 2>&1 || exit 1;
-    rm -rf "\${work_dir}/cpipes-output" > /dev/null 2>&1 || exit 1;
+    rm -rf "\${work_dir}/cpipes-output" || exit 1;
     ]]></command>
     <inputs>
         <conditional name="input_read_type_cond">