Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 126:9cf321470e20

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planemo upload
author kkonganti
date Wed, 03 Jul 2024 14:23:45 -0400
parents dcd41789fb61
children 2b6b44652357
files cfsan_centriflaken.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Wed Jul 03 13:11:34 2024 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 03 14:23:45 2024 -0400
@@ -7,7 +7,8 @@
     <command detect_errors="exit_code"><![CDATA[
     time_stamp=\$(date +%Y-%m-%d-%s);
     work_dir="/galaxy/nf-work-dirs/centriflaken_work_dir-"\${time_stamp};
-    input_path="\${work_dir}/cpipes-input";
+    #input_path="\${work_dir}/cpipes-input";
+    input_path=\$(pwd)/cpipes-input
     mkdir -p \$work_dir || exit 1;
     mkdir -p "\${input_path}" || exit 1;
     #import re