Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 21:abe3bc84455b

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"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 09:37:16 -0400
parents 91480ddc3fcd
children 0c42dc147b29
files cfsan_centriflaken.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Wed Jun 29 09:33:18 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jun 29 09:37:16 2022 -0400
@@ -32,7 +32,7 @@
 	--flye_genome_size '${genome_size}'
 	-profile $runtime_profile
     -resume;
-    cp ./cpipes-output/${pipeline}-multiqc/multiqc_report.html .;
+    cp \${pwd_path}/cpipes-output/${pipeline}-multiqc/multiqc_report.html ${pwd_path}/;
     ]]></command>
     <inputs>
         <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" />