Mercurial > repos > kkonganti > cfsan_centriflaken
changeset 81:e389a6f6aa3b
"planemo upload"
author | kkonganti |
---|---|
date | Wed, 13 Jul 2022 16:42:45 -0400 |
parents | ffa207a73483 |
children | 460fa12fd793 |
files | cfsan_centriflaken.xml |
diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/cfsan_centriflaken.xml Wed Jul 13 16:40:14 2022 -0400 +++ b/cfsan_centriflaken.xml Wed Jul 13 16:42:45 2022 -0400 @@ -11,11 +11,12 @@ #if (str($input_read_type_cond.input_read_type) == "single_long"): #for _, $unpaired in enumerate($input_read_type_cond.input): #if not $unpaired.ext.endswith(('fastq', 'fastq.gz')): - #set read_R1 = str($unpaired.name) + str('.') + str($unpaired.ext) + #set read1 = str($unpaired.name) + str('.') + str($unpaired.ext) #else: - #set read_R1 = str($unpaired.name) + #set read1 = str($unpaired.name) #end if - ln -sf '$unpaired' './cpipes-input/$read_R1'; + echo $unpaired.ext; + ln -sf '$unpaired' './cpipes-input/$read1'; #end for #elif (str($input_read_type_cond.input_read_type) == "paired"): #for _, $pair in enumerate($input_read_type_cond.input_pair)