Mercurial > repos > kkonganti > cfsan_cronology
comparison 0.2.0/modules/quast/main.nf @ 18:a72c172df773 tip
planemo upload
| author | kkonganti |
|---|---|
| date | Mon, 15 Jul 2024 21:40:42 -0400 |
| parents | bc5d019d2c3a |
| children |
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| 17:b571995ddb51 | 18:a72c172df773 |
|---|---|
| 58 zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed -e '1!d' | sed "s/\$zcmd //" ) | 58 zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed -e '1!d' | sed "s/\$zcmd //" ) |
| 59 elif type gzip > /dev/null 2>&1; then | 59 elif type gzip > /dev/null 2>&1; then |
| 60 zcmd="gzip" | 60 zcmd="gzip" |
| 61 | 61 |
| 62 if [ "${workflow.containerEngine}" != "null" ]; then | 62 if [ "${workflow.containerEngine}" != "null" ]; then |
| 63 zver=\$( echo \$( \$zcmd --help 2>&1 ) | sed -e '1!d; s/ (.*\$//' ) | 63 zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed -e '1!d; s/^.*\$zcmd //; s/ Copyright.*\$//' ) |
| 64 else | 64 else |
| 65 zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed "s/^.*(\$zcmd) //; s/\$zcmd //; s/ Copyright.*\$//" ) | 65 zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed "s/^.*(\$zcmd) //; s/\$zcmd //; s/ Copyright.*\$//" ) |
| 66 fi | 66 fi |
| 67 fi | 67 fi |
| 68 | 68 |