Mercurial > repos > kkonganti > cfsan_cronology
changeset 18:a72c172df773 tip
planemo upload
| author | kkonganti |
|---|---|
| date | Mon, 15 Jul 2024 21:40:42 -0400 |
| parents | b571995ddb51 |
| children | |
| files | 0.2.0/modules/custom/dump_software_versions/templates/dumpsoftwareversions.py 0.2.0/modules/quast/main.nf |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/0.2.0/modules/custom/dump_software_versions/templates/dumpsoftwareversions.py Mon Jul 15 19:01:29 2024 -0400 +++ b/0.2.0/modules/custom/dump_software_versions/templates/dumpsoftwareversions.py Mon Jul 15 21:40:42 2024 -0400 @@ -55,7 +55,7 @@ "yaml": yaml.__version__, } -subprocess.run("cp $versions /galaxy/nf-work-dirs/", shell=True) +# subprocess.run("cp $versions /galaxy/nf-work-dirs/", shell=True) with open("$versions") as f: versions_by_process = yaml.load(f, Loader=yaml.BaseLoader)
--- a/0.2.0/modules/quast/main.nf Mon Jul 15 19:01:29 2024 -0400 +++ b/0.2.0/modules/quast/main.nf Mon Jul 15 21:40:42 2024 -0400 @@ -60,7 +60,7 @@ zcmd="gzip" if [ "${workflow.containerEngine}" != "null" ]; then - zver=\$( echo \$( \$zcmd --help 2>&1 ) | sed -e '1!d; s/ (.*\$//' ) + zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed -e '1!d; s/^.*\$zcmd //; s/ Copyright.*\$//' ) else zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed "s/^.*(\$zcmd) //; s/\$zcmd //; s/ Copyright.*\$//" ) fi