Mercurial > repos > kkonganti > hfp_nowayout
annotate 0.5.0/lib/help/gsatpy.nf @ 0:97cd2f532efe
planemo upload
| author | kkonganti |
|---|---|
| date | Mon, 31 Mar 2025 14:50:40 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| kkonganti@0 | 1 // Help text for gen_sim_abn_table.py (gsat) within CPIPES. |
| kkonganti@0 | 2 |
| kkonganti@0 | 3 def gsatpyHelp(params) { |
| kkonganti@0 | 4 |
| kkonganti@0 | 5 Map tool = [:] |
| kkonganti@0 | 6 Map toolspecs = [:] |
| kkonganti@0 | 7 tool.text = [:] |
| kkonganti@0 | 8 tool.helpparams = [:] |
| kkonganti@0 | 9 |
| kkonganti@0 | 10 toolspecs = [ |
| kkonganti@0 | 11 'gsatpy_run': [ |
| kkonganti@0 | 12 clihelp: 'Run the gen_sim_abn_table.py script. Default: ' + |
| kkonganti@0 | 13 (params.gsatpy_run ?: false), |
| kkonganti@0 | 14 cliflag: null, |
| kkonganti@0 | 15 clivalue: null |
| kkonganti@0 | 16 ], |
| kkonganti@0 | 17 'gsatpy_header': [ |
| kkonganti@0 | 18 clihelp: 'Does the taxonomic summary result files have ' + |
| kkonganti@0 | 19 'a header line. ' + |
| kkonganti@0 | 20 " Default: ${params.gsatpy_header}", |
| kkonganti@0 | 21 cliflag: '-header', |
| kkonganti@0 | 22 clivalue: (params.gsatpy_header ? ' ' : '') |
| kkonganti@0 | 23 ] |
| kkonganti@0 | 24 ] |
| kkonganti@0 | 25 |
| kkonganti@0 | 26 toolspecs.each { |
| kkonganti@0 | 27 k, v -> tool.text['--' + k] = "${v.clihelp}" |
| kkonganti@0 | 28 tool.helpparams[k] = [ cliflag: "${v.cliflag}", clivalue: v.clivalue ] |
| kkonganti@0 | 29 } |
| kkonganti@0 | 30 |
| kkonganti@0 | 31 return tool |
| kkonganti@0 | 32 } |