Mercurial > repos > kkonganti > hfp_nowayout
changeset 8:3539fbeb4230
planemo upload
author | kkonganti |
---|---|
date | Tue, 01 Apr 2025 10:27:25 -0400 |
parents | a5055946f9c2 |
children | 9c603577838a |
files | 0.5.0/workflows/nowayout.nf |
diffstat | 1 files changed, 10 insertions(+), 1 deletions(-) [+] |
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--- a/0.5.0/workflows/nowayout.nf Mon Mar 31 15:25:02 2025 -0400 +++ b/0.5.0/workflows/nowayout.nf Tue Apr 01 10:27:25 2025 -0400 @@ -301,10 +301,19 @@ file_path_obj = file( file_path ) if (msg.toString().find(/(?i)KMA/)) { - if (!file_path_obj.parent.exists() || file_path_obj.parent.size() == 0) { + if (!file_path_obj.parent.exists()) { stopNow("Please check if your ${msg}\n" + "[ ${file_path} ]\nexists and that the files are not of size 0.") } + + // Check if db files within parent path are empty. + file_path_obj.eachFileRecurse { + if (it.size() == 0) { + stopNow("For ${msg}, within\n" + + "[ ${file_path} ],\nthe following file is of size 0: ${it.name}") + } + } + } else if (!file_path_obj.exists() || file_path_obj.size() == 0) { stopNow("Please check if your ${msg} file\n" +