Mercurial > repos > rliterman > csp2
annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam-0.23.0.dist-info/AUTHORS @ 68:5028fdace37b
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 16:23:26 -0400 |
| parents | |
| children |
| rev | line source |
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| jpayne@68 | 1 Many people have contributed to pysam. The list of GitHub contributors |
| jpayne@68 | 2 is the best place to get a full list of authors and their contributions. |
| jpayne@68 | 3 The list and summary below is a out-of-date and represents the earlier |
| jpayne@68 | 4 stages of the project. |
| jpayne@68 | 5 |
| jpayne@68 | 6 List of contributors: |
| jpayne@68 | 7 |
| jpayne@68 | 8 Andreas Heger, Tildon Grant Belgard, Florian Finkernagel, |
| jpayne@68 | 9 Leo Goodstadt, Martin Goodson all contributed code to pysam. |
| jpayne@68 | 10 |
| jpayne@68 | 11 John Marshall has been looking after pysam and its community for |
| jpayne@68 | 12 several years, as well as making many code contributions and improving |
| jpayne@68 | 13 the engineering of pysam. |
| jpayne@68 | 14 |
| jpayne@68 | 15 Kevin B. Jacobs implemented a Cython wrapper for the VCF/BCF |
| jpayne@68 | 16 reader/writer in htslib. |
| jpayne@68 | 17 |
| jpayne@68 | 18 Gerton Lunter provided a validating VCF parser. |
| jpayne@68 | 19 |
| jpayne@68 | 20 Marcel Martin implemented Python 3 compatibility and added type hints. |
| jpayne@68 | 21 Ben Schiller contributed a Windows compatible clone. |
| jpayne@68 | 22 |
| jpayne@68 | 23 The sources in the directory samtools are from the samtools project: |
| jpayne@68 | 24 http://samtools.sourceforge.net/. All of these are available under the |
| jpayne@68 | 25 MIT licence. The attributions for this code are as follows: |
| jpayne@68 | 26 |
| jpayne@68 | 27 Heng Li from the Sanger Institute wrote most of the initial source code |
| jpayne@68 | 28 of SAMtools and various converters. |
| jpayne@68 | 29 |
| jpayne@68 | 30 Bob Handsaker from the Broad Institute is a major contributor to the |
| jpayne@68 | 31 SAM/BAM specification. He designed and implemented the BGZF format, the |
| jpayne@68 | 32 underlying indexable compression format for the BAM format. BGZF does |
| jpayne@68 | 33 not support arithmetic between file offsets. |