Mercurial > repos > rliterman > csp2
comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/HashSet.h @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
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| children |
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| 67:0e9998148a16 | 69:33d812a61356 |
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| 1 // Copyright © 2015, Battelle National Biodefense Institute (BNBI); | |
| 2 // all rights reserved. Authored by: Brian Ondov, Todd Treangen, | |
| 3 // Sergey Koren, and Adam Phillippy | |
| 4 // | |
| 5 // See the LICENSE.txt file included with this software for license information. | |
| 6 | |
| 7 #ifndef HashSet_h | |
| 8 #define HashSet_h | |
| 9 | |
| 10 #include "HashList.h" | |
| 11 #include "robin_hood.h" | |
| 12 #include <vector> | |
| 13 | |
| 14 class HashSet | |
| 15 { | |
| 16 public: | |
| 17 | |
| 18 HashSet(bool use64New) : use64(use64New) {} | |
| 19 | |
| 20 int size() const {return use64 ? hashes64.size() : hashes32.size();} | |
| 21 void clear() {use64 ? hashes64.clear() : hashes32.clear();} | |
| 22 uint32_t count(hash_u hash) const; | |
| 23 void erase(hash_u hash); | |
| 24 void insert(hash_u hash, uint32_t count = 1); | |
| 25 void toHashList(HashList & hashList) const; | |
| 26 void toCounts(std::vector<uint32_t> & counts) const; | |
| 27 | |
| 28 private: | |
| 29 | |
| 30 bool use64; | |
| 31 robin_hood::unordered_map<hash32_t, uint32_t> hashes32; | |
| 32 robin_hood::unordered_map<hash64_t, uint32_t> hashes64; | |
| 33 }; | |
| 34 | |
| 35 #endif |