Mercurial > repos > rliterman > csp2
comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/build.xml @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
| parents | |
| children |
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| 67:0e9998148a16 | 69:33d812a61356 |
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| 1 <project name="bbtools" default="dist" basedir="."> | |
| 2 <description> | |
| 3 Brian Bushnell's tools! | |
| 4 </description> | |
| 5 | |
| 6 <!-- genepool specific values; you can override these from the command line --> | |
| 7 <property name="jcompiler" value="org.eclipse.jdt.core.JDTCompilerAdapter"/> | |
| 8 <property name="mpijar" location="/usr/common/usg/hpc/openmpi/gnu4.6/sge/1.8.1/ib_2.1-1.0.0/lib/mpi.jar"/> | |
| 9 | |
| 10 <!-- set global properties for this build --> | |
| 11 <property name="src" location="current"/> | |
| 12 <property name="build" location="build"/> | |
| 13 <property name="dist" location="dist"/> | |
| 14 <property name="resources" location="resources"/> | |
| 15 | |
| 16 <path id="class.path"> | |
| 17 <pathelement location="${mpijar}"/> | |
| 18 </path> | |
| 19 | |
| 20 <target name="init"> | |
| 21 <!-- Create the time stamp --> | |
| 22 <tstamp/> | |
| 23 <!-- Create the build directory structure used by compile --> | |
| 24 <mkdir dir="${build}"/> | |
| 25 </target> | |
| 26 | |
| 27 <target name="compile" depends="init" | |
| 28 description="compile the source " > | |
| 29 | |
| 30 <!-- Compile the java code from ${src} into ${build} --> | |
| 31 <javac srcdir="${src}" destdir="${build}" compiler="${jcompiler}" nowarn="true" includeantruntime="false" source="1.7" target="1.7" debug="true" debuglevel="lines,vars,source" > | |
| 32 <classpath refid="class.path" /> | |
| 33 <exclude name="jgi/KmerNormalizeExact.java" /> | |
| 34 </javac> | |
| 35 </target> | |
| 36 | |
| 37 <target name="dist" depends="compile" | |
| 38 description="generate the distribution" > | |
| 39 | |
| 40 <!-- Create the distribution directory --> | |
| 41 <mkdir dir="${dist}/lib"/> | |
| 42 <!-- Put everything in ${build} into the MyProject-${DSTAMP}.jar file --> | |
| 43 <jar jarfile="${dist}/lib/BBTools.jar"> | |
| 44 <fileset dir="${build}"/> | |
| 45 <fileset dir="${resources}"/> | |
| 46 </jar> | |
| 47 </target> | |
| 48 | |
| 49 <target name="clean" | |
| 50 description="clean up" > | |
| 51 | |
| 52 <!-- Delete the ${build} and ${dist} directory trees --> | |
| 53 <delete dir="${build}"/> | |
| 54 <delete dir="${dist}"/> | |
| 55 </target> | |
| 56 </project> |