--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/build.xml	Tue Mar 18 17:55:14 2025 -0400
@@ -0,0 +1,56 @@
+<project name="bbtools" default="dist" basedir=".">
+    <description>
+        Brian Bushnell's tools!
+    </description>
+
+    <!-- genepool specific values; you can override these from the command line -->
+    <property name="jcompiler" value="org.eclipse.jdt.core.JDTCompilerAdapter"/>
+    <property name="mpijar" location="/usr/common/usg/hpc/openmpi/gnu4.6/sge/1.8.1/ib_2.1-1.0.0/lib/mpi.jar"/>
+
+    <!-- set global properties for this build -->
+    <property name="src" location="current"/>
+    <property name="build" location="build"/>
+    <property name="dist" location="dist"/>
+    <property name="resources" location="resources"/>
+
+    <path id="class.path">
+        <pathelement location="${mpijar}"/>
+    </path>
+
+    <target name="init">
+        <!-- Create the time stamp -->
+        <tstamp/>
+        <!-- Create the build directory structure used by compile -->
+        <mkdir dir="${build}"/>
+    </target>
+
+    <target name="compile" depends="init"
+        description="compile the source " >
+
+        <!-- Compile the java code from ${src} into ${build} -->
+        <javac srcdir="${src}" destdir="${build}" compiler="${jcompiler}" nowarn="true" includeantruntime="false" source="1.7" target="1.7" debug="true" debuglevel="lines,vars,source" >
+            <classpath refid="class.path" />
+            <exclude name="jgi/KmerNormalizeExact.java" />
+        </javac>
+    </target>
+
+    <target name="dist" depends="compile"
+        description="generate the distribution" >
+
+        <!-- Create the distribution directory -->
+        <mkdir dir="${dist}/lib"/>
+        <!-- Put everything in ${build} into the MyProject-${DSTAMP}.jar file -->
+        <jar jarfile="${dist}/lib/BBTools.jar">
+            <fileset dir="${build}"/>
+            <fileset dir="${resources}"/>
+        </jar>
+    </target>
+
+    <target name="clean"
+        description="clean up" >
+
+        <!-- Delete the ${build} and ${dist} directory trees -->
+        <delete dir="${build}"/>
+        <delete dir="${dist}"/>
+    </target>
+</project>