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comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/INSTALL @ 69:33d812a61356
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| author | jpayne |
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| date | Tue, 18 Mar 2025 17:55:14 -0400 |
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| 67:0e9998148a16 | 69:33d812a61356 |
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| 1 -=- MUMmer3.x INSTALLATION README -=- | |
| 2 | |
| 3 -- TO INSTALL -- | |
| 4 Extract the tarfile by typing: | |
| 5 | |
| 6 "tar -xvzf MUMmer3.x" | |
| 7 | |
| 8 After extracting the tarfile into the desired installation directory, | |
| 9 change to the "MUMmer3.x" directory. Once in this directory, type: | |
| 10 | |
| 11 "make check" | |
| 12 | |
| 13 This command will check for the necessary utilities that the MUMmer package | |
| 14 depends on. If you see no error messages, the check was successful. Next, type: | |
| 15 | |
| 16 "make install" | |
| 17 | |
| 18 This command will build the appropriate scripts and binaries in the current | |
| 19 directory. Refer to the "README" file in this directory for further assistance, | |
| 20 or the "docs" directory for detailed information on the various utilities. | |
| 21 To make all of the scripts and executables accessible from different | |
| 22 directories, simply add the full MUMmer directory path to your system PATH, or | |
| 23 link the desired MUMmer programs to your favorite bin directory. Please note | |
| 24 that the 'make' command dynamically generates the MUMmer scripts with the | |
| 25 appropriate paths, therefore if the MUMmer directory is moved after the 'make' | |
| 26 command is issued, the scripts will fail to run. If the MUMmer executables | |
| 27 are needed in a directory other than the install directory, it is recommended | |
| 28 that the install directory be left untouched and its files linked to the | |
| 29 desired destination. An alternative would be to move the install directory and | |
| 30 reissue the 'make' command at the new location. | |
| 31 | |
| 32 | |
| 33 | |
| 34 -- SYSTEM REQUIREMENTS -- | |
| 35 MUMmer3.10 has been tested successfully on: | |
| 36 | |
| 37 - Redhat Linux 6.2, 7.3 (Pentium 4) | |
| 38 - Compaq Tru64 UNIX 5.1 (alpha) | |
| 39 - SunOS UNIX 5.8 (sparc) | |
| 40 - Mac OS X 10.2.8 (PowerPC G4) | |
| 41 | |
| 42 Sufficient memory and disk space are necessary, but required sizes vary | |
| 43 with input size. Be aware of your disk and memory usage, because insufficient | |
| 44 capacities will result in incorrect or missing output. Required resources | |
| 45 differ depending on the input size, but in general 512 MB of RAM and 1 GB of | |
| 46 disk space is sufficient for most applications. | |
| 47 It is possible to port the code to any system with a C++ compiler but | |
| 48 this has not been tested and will not be supported. In addition, you may need | |
| 49 to alter the Makefile to direct 'make' to your native compiler and other | |
| 50 system resources. | |
| 51 For Mac OSX, the Mac development kit must be downloaded and installed. This | |
| 52 kit will include 'gcc', 'ar', and 'make' which are necessary for building | |
| 53 MUMmer. MUMmer is not supported for any Mac operating system other than OSX. | |
| 54 | |
| 55 | |
| 56 | |
| 57 -- SOFTWARE REQUIREMENTS -- | |
| 58 The MUMmer3.x package requires the following to run successfully. In the | |
| 59 absence of one or more of these utilities, certain MUMmer programs may fail | |
| 60 to run correctly. Listed in parenthesis are the versions used to test the | |
| 61 MUMmer package. These versions, or subsequent versions should assure the proper | |
| 62 execution of the various MUMmer programs. These utilities must be accessible | |
| 63 via the system path: | |
| 64 | |
| 65 - make (GNU make 3.79.1) | |
| 66 - perl (PERL 5.6.0) | |
| 67 - sh (GNU sh 1.14.7) | |
| 68 - csh (tcsh 6.10.00) | |
| 69 - g++ (GNU gcc 2.95.3) | |
| 70 - sed (GNU sed 3.02) | |
| 71 - awk (GNU awk 3.0.4) | |
| 72 - ar (GNU ar 2.9.5) | |
| 73 | |
| 74 | |
| 75 -- OPTIONAL UTILITIES -- | |
| 76 To use the visualization tools included with MUMmer, it may be necessary | |
| 77 to download and install the following utilities: | |
| 78 | |
| 79 - fig2dev (fig2dev 3.2.3) | |
| 80 - gnuplot (gnuplot 4.0) | |
| 81 - xfig (xfig 3.2) | |
| 82 | |
| 83 | |
| 84 | |
| 85 -- UN-INSTALLATION -- | |
| 86 In the "MUMmer3.x" base directory type: | |
| 87 | |
| 88 "make uninstall" | |
| 89 | |
| 90 This will remove all binary executables and runnable scripts from the | |
| 91 base and aux_bin directories. The original source files will remain unchanged, | |
| 92 thus reverting the package to its post-untar, pre-install state. | |
| 93 | |
| 94 Please address questions and bug reports to: <mummer-help@lists.sourceforge.net> | |
| 95 | |
| 96 Last update: May 12, 2005 |