Mercurial > repos > rliterman > csp2
diff CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/INSTALL @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author | jpayne |
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date | Tue, 18 Mar 2025 17:55:14 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/INSTALL Tue Mar 18 17:55:14 2025 -0400 @@ -0,0 +1,96 @@ +-=- MUMmer3.x INSTALLATION README -=- + +-- TO INSTALL -- + Extract the tarfile by typing: + +"tar -xvzf MUMmer3.x" + + After extracting the tarfile into the desired installation directory, +change to the "MUMmer3.x" directory. Once in this directory, type: + +"make check" + + This command will check for the necessary utilities that the MUMmer package +depends on. If you see no error messages, the check was successful. Next, type: + +"make install" + + This command will build the appropriate scripts and binaries in the current +directory. Refer to the "README" file in this directory for further assistance, +or the "docs" directory for detailed information on the various utilities. + To make all of the scripts and executables accessible from different +directories, simply add the full MUMmer directory path to your system PATH, or +link the desired MUMmer programs to your favorite bin directory. Please note +that the 'make' command dynamically generates the MUMmer scripts with the +appropriate paths, therefore if the MUMmer directory is moved after the 'make' +command is issued, the scripts will fail to run. If the MUMmer executables +are needed in a directory other than the install directory, it is recommended +that the install directory be left untouched and its files linked to the +desired destination. An alternative would be to move the install directory and +reissue the 'make' command at the new location. + + + +-- SYSTEM REQUIREMENTS -- + MUMmer3.10 has been tested successfully on: + + - Redhat Linux 6.2, 7.3 (Pentium 4) + - Compaq Tru64 UNIX 5.1 (alpha) + - SunOS UNIX 5.8 (sparc) + - Mac OS X 10.2.8 (PowerPC G4) + + Sufficient memory and disk space are necessary, but required sizes vary +with input size. Be aware of your disk and memory usage, because insufficient +capacities will result in incorrect or missing output. Required resources +differ depending on the input size, but in general 512 MB of RAM and 1 GB of +disk space is sufficient for most applications. + It is possible to port the code to any system with a C++ compiler but +this has not been tested and will not be supported. In addition, you may need +to alter the Makefile to direct 'make' to your native compiler and other +system resources. + For Mac OSX, the Mac development kit must be downloaded and installed. This +kit will include 'gcc', 'ar', and 'make' which are necessary for building +MUMmer. MUMmer is not supported for any Mac operating system other than OSX. + + + +-- SOFTWARE REQUIREMENTS -- + The MUMmer3.x package requires the following to run successfully. In the +absence of one or more of these utilities, certain MUMmer programs may fail +to run correctly. Listed in parenthesis are the versions used to test the +MUMmer package. These versions, or subsequent versions should assure the proper +execution of the various MUMmer programs. These utilities must be accessible +via the system path: + + - make (GNU make 3.79.1) + - perl (PERL 5.6.0) + - sh (GNU sh 1.14.7) + - csh (tcsh 6.10.00) + - g++ (GNU gcc 2.95.3) + - sed (GNU sed 3.02) + - awk (GNU awk 3.0.4) + - ar (GNU ar 2.9.5) + + +-- OPTIONAL UTILITIES -- + To use the visualization tools included with MUMmer, it may be necessary +to download and install the following utilities: + + - fig2dev (fig2dev 3.2.3) + - gnuplot (gnuplot 4.0) + - xfig (xfig 3.2) + + + +-- UN-INSTALLATION -- + In the "MUMmer3.x" base directory type: + +"make uninstall" + + This will remove all binary executables and runnable scripts from the +base and aux_bin directories. The original source files will remain unchanged, +thus reverting the package to its post-untar, pre-install state. + +Please address questions and bug reports to: <mummer-help@lists.sourceforge.net> + +Last update: May 12, 2005