Mercurial > repos > rliterman > csp2

comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pybedtools/paths.py @ 68:5028fdace37b

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 16:23:26 -0400
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67:0e9998148a16 68:5028fdace37b
1 """
2 Module for handling paths.
3
4 This is kept separate from helpers module in order to avoid circular imports in
5 setting the bedtools path.
6 """
7
8 import pybedtools
9 from pybedtools import bedtool
10 from . import settings
11 from importlib import reload
12
13
14 def _set_bedtools_path(path=""):
15 old_path = settings._bedtools_path
16 settings._bedtools_path = path
17 if old_path != path:
18 reload(bedtool)
19 reload(pybedtools)
20 return True
21
22
23 def _get_bedtools_path():
24 return settings._bedtools_path
25
26
27 def _set_R_path(path=""):
28 settings._R_path = path