Mercurial > repos > rliterman > csp2
annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pybedtools/paths.py @ 68:5028fdace37b
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 16:23:26 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| jpayne@68 | 1 """ |
| jpayne@68 | 2 Module for handling paths. |
| jpayne@68 | 3 |
| jpayne@68 | 4 This is kept separate from helpers module in order to avoid circular imports in |
| jpayne@68 | 5 setting the bedtools path. |
| jpayne@68 | 6 """ |
| jpayne@68 | 7 |
| jpayne@68 | 8 import pybedtools |
| jpayne@68 | 9 from pybedtools import bedtool |
| jpayne@68 | 10 from . import settings |
| jpayne@68 | 11 from importlib import reload |
| jpayne@68 | 12 |
| jpayne@68 | 13 |
| jpayne@68 | 14 def _set_bedtools_path(path=""): |
| jpayne@68 | 15 old_path = settings._bedtools_path |
| jpayne@68 | 16 settings._bedtools_path = path |
| jpayne@68 | 17 if old_path != path: |
| jpayne@68 | 18 reload(bedtool) |
| jpayne@68 | 19 reload(pybedtools) |
| jpayne@68 | 20 return True |
| jpayne@68 | 21 |
| jpayne@68 | 22 |
| jpayne@68 | 23 def _get_bedtools_path(): |
| jpayne@68 | 24 return settings._bedtools_path |
| jpayne@68 | 25 |
| jpayne@68 | 26 |
| jpayne@68 | 27 def _set_R_path(path=""): |
| jpayne@68 | 28 settings._R_path = path |