Mercurial > repos > rliterman > csp2
comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libcutils.pyi @ 68:5028fdace37b
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 16:23:26 -0400 |
| parents | |
| children |
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| 67:0e9998148a16 | 68:5028fdace37b |
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| 1 from array import array | |
| 2 from typing import Iterable, Optional, Tuple, Union | |
| 3 | |
| 4 def get_encoding_error_handler() -> str: ... | |
| 5 def set_encoding_error_handler(name: str) -> str: ... | |
| 6 def _pysam_dispatch( | |
| 7 collection: str, | |
| 8 method: str, | |
| 9 args: Optional[Iterable[str]], | |
| 10 catch_stdout: bool = ..., | |
| 11 is_usage: bool = ..., | |
| 12 save_stdout: Optional[str] = ..., | |
| 13 ) -> Tuple[int, Union[bytes, str], Union[bytes, str]]: ... | |
| 14 def parse_region( | |
| 15 contig: Optional[str] = ..., | |
| 16 start: Optional[int] = ..., | |
| 17 stop: Optional[int] = ..., | |
| 18 region: Optional[str] = ..., | |
| 19 reference: Optional[str] = ..., | |
| 20 end: Optional[int] = ..., | |
| 21 ) -> Tuple[str, int, int]: ... | |
| 22 def qualitystring_to_array( | |
| 23 input_str: Optional[str], offset: int = ... | |
| 24 ) -> Optional[array]: ... | |
| 25 def array_to_qualitystring(qualities: array, offset: int = ...) -> Optional[str]: ... | |
| 26 def qualities_to_qualitystring( | |
| 27 qualities: Union[array, Iterable[str]], offset: int = ... | |
| 28 ) -> Optional[str]: ... |